Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g01646 ATGTCATCCAAAGCCACTGTTAGAAGGCGAATTCTGGAGAGGCAAACATGTTCTAAAGAGAAAGATAGAACAAGCCAAAACATATTGTCTAAACACCTTAAGAAGATTTACCCAATTGGGCTTCAAAGAACCACTTCATCACTCTCTTTATCTTCATTATCATTGTCTTTGTCCCAAAATTCAAATGATTCTTCTCTTACAGACTCCTCAATCCAACTCGATCAGAAGATTTCGTATGCGATTCGTTTGATTACGCCGCCGCCTCCTGAAAGAAGAGAAGCTCCATTGCCTAAGAGTGTCCAACAACAATGTCAGGAACTTGGTGATGGGGAACTCAGGAGGTGCAACTGGATCACTCATACCAGTGATAAAGCCTATGTATCCTTTCACGACGAGTGTTGGGGCGTCCCGGTGTATGACGACAACCGACTTTTCGAGCTACTCGCTCTATCGGGGATGCTGATGGACTACAATTGGACTGAAATTGTGAAAAGAAGGGAACTATTCAGAGAAGCTTTTGCTGGATTTGAGGCAAGTACTGTGGCCAACATGGGGGAGAAAGAGATATCAGATATAGCATCTGACAAGGCCATTATGCTGGTGGAGAGCAGAGTGAGGTGCATAGTAGACAATGCCAAGTGCATATTGAAGATAGCTAGAGATTTTGGGTCGTTCAGTAACTATATGTGGAGCTATATGAACTTCAAACCAACAATAAACAGATTTAGATATCCAAGAAATGTTCCCCTGAGGAGTCCCAAAGCGGAAGCCATTAGCAAGGACATGGTGAAGCGCGGTTTTCGGTTTGTTGGGCCAGTGATTGTCTATTCGTTCATGCAGGCGGCAGGGTTGACGATCGATCATCTTGTGGATTGTTTTCGGCATGGCGAATGCGTAAATCTTGCAGAAAGACCATGGAGACATATCTGA 930 43.98 MSSKATVRRRILERQTCSKEKDRTSQNILSKHLKKIYPIGLQRTTSSLSLSSLSLSLSQNSNDSSLTDSSIQLDQKISYAIRLITPPPPERREAPLPKSVQQQCQELGDGELRRCNWITHTSDKAYVSFHDECWGVPVYDDNRLFELLALSGMLMDYNWTEIVKRRELFREAFAGFEASTVANMGEKEISDIASDKAIMLVESRVRCIVDNAKCILKIARDFGSFSNYMWSYMNFKPTINRFRYPRNVPLRSPKAEAISKDMVKRGFRFVGPVIVYSFMQAAGLTIDHLVDCFRHGECVNLAERPWRHI 309
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8400007 8401351 + CmoCh04G016460.1 Cmo04g01646 380621

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g01646 309 Gene3D Hypothetical protein; domain 2 112 296 - -
Cmo04g01646 309 Pfam Methyladenine glycosylase 121 295 IPR005019 GO:0006284|GO:0008725
Cmo04g01646 309 PANTHER OS04G0501200 PROTEIN 3 309 - -
Cmo04g01646 309 SUPERFAMILY DNA-glycosylase 113 299 IPR011257 GO:0003824|GO:0006281
Cmo04g01646 309 PANTHER DNA GLYCOSYLASE SUPERFAMILY PROTEIN 3 309 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g01646 K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] - csv:101218195 568.926
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01646 Cmo-Chr4:8400007 Cmo08g00581 Cmo-Chr8:3554457 1.04E-73 dispersed
Cmo18g01104 Cmo-Chr18:11487282 Cmo04g01646 Cmo-Chr4:8400007 1.40E-09 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g998 . Blo16g01074 . Bda11g01165 Bpe13g01363 . . . Cmo04g01646 . . . Car04g01624 . Sed06g1810 . Cpe01g01396 Bhi07g01447 Tan04g0956 Cmetu10g0683 Lac13g0409 Hepe10g1821 . . Cla05g02376 Cam05g2545 Cec05g2577 Cco05g2616 Clacu05g2544 Cmu05g2403 Cre05g2520 . . . . Lsi04g00342 Csa05g02535 Chy10g01078 Cme10g00333 . . . Bda11g01165 . . . Bma06g00746 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009566 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 3 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo04g01646 Cmo_Chr04 FPKM 59.726357 68.214874 132.528595 137.116287 16.209452 19.70055 17.292868 70.949341 72.228424 69.191788