Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g01649 ATGCAGTTTGAGTCTATCTTGAGCTACTCTCCTTACGACAATATCTCTAAGGGAAGTTGTTATCCTCCAATGCTTGTCACAGCCTCATTCCGTGATGCAAGGGTTGGAGTATGGGAAGCTGCCAAATGGGTGGCAAAAATCCGAGACACGACATGCTCCCGTTGTTCGACTTCTGCAATTTTGAAGACCAATATGGTTGGAGGACACTTTGGTGAAGGTGGTCTCTATGGTGGATGTGAAGAGACAGCTTACGACTACGCTTTTCTCATCAAATTCTTGCCGCATCGATTCACGGATAGCGACGATTTTAGTGGTGAATCTGATTCGTTCTTGTATCGGATCTTGAAAGATCTATATAGTTCTGTCTCCACTCCAGAACGTCGTATTGAGCTTTGGTCTCTTTTGGATATTCTCTCCTGCCCCGAGGAGAGGGGGGAGGGGAGGAGAAGACTATCTGGTGCTGTGAATCTGGCGAGATGA 480 46.67 MQFESILSYSPYDNISKGSCYPPMLVTASFRDARVGVWEAAKWVAKIRDTTCSRCSTSAILKTNMVGGHFGEGGLYGGCEETAYDYAFLIKFLPHRFTDSDDFSGESDSFLYRILKDLYSSVSTPERRIELWSLLDILSCPEERGEGRRRLSGAVNLAR 159
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8405987 8409924 - CmoCh04G016490.1 Cmo04g01649 380624

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g01649 159 Pfam Prolyl oligopeptidase family 3 93 IPR001375 GO:0006508|GO:0008236
Cmo04g01649 159 PANTHER PROLYL OLIGOPEPTIDASE FAMILY PROTEIN 2 93 - -
Cmo04g01649 159 Gene3D alpha/beta hydrolase 1 97 IPR029058 -
Cmo04g01649 159 PRINTS Prolyl oligopeptidase serine protease (S9A) signature 2 17 IPR002470 GO:0004252|GO:0006508
Cmo04g01649 159 PRINTS Prolyl oligopeptidase serine protease (S9A) signature 21 43 IPR002470 GO:0004252|GO:0006508
Cmo04g01649 159 PANTHER PROTEASE FAMILY S9A OLIGOPEPTIDASE 2 93 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g01649 - - - bhj:120081735 171.785
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01649 Cmo-Chr4:8405987 Cmo12g01170 Cmo-Chr12:10591920 1.72E-17 dispersed
Cmo04g01649 Cmo-Chr4:8405987 Cmo18g00819 Cmo-Chr18:9594441 1.25E-12 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g992 . . . . . . Bma14g01669 . Cmo04g01649 . . . Car04g01626 . . . Cpe01g01398 Bhi07g01448 . . . . . . . . . . . . . . . . . . Csa05g02531 Chy10g01075 Cme10g01398 . Blo11g00797 Bda07g01492 . Bpe11g01659 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0049993 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo04g01649 Cmo_Chr04 FPKM 41.313126 44.927456 34.093395 36.645855 61.390995 53.13636 64.875465 50.123585 48.903831 52.980854