Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g01650 ATGGAGGATTTATGGAAGAGAGCGAAATCGTTCGCAGAAGAAGCGGCTAAGAAATCCCAGACCTTAACGTCGACCTCCACACTCTCCGAATTGGTCTCGGAAACTGCCAAAAAGTCCAAGGAGCTCGCCGCCGAGGCCTCCAAGACTGCTGATCTCATCAAAACGGCCGCCATCAAGCAGGCCGATCACCTCAAATCACTCAACGTCGCCGACATTATTCCTCCTCAGCTTTCTTCCATTTCCATTCCCAATTTATCTGCTCCCTCGCCTCATTCTCAGTCCGAGCTTGAAAAGTTTGGCCTCAACGACGATCTGAGAGAATTTGTGAGTGGCTTCACTCCAACTACTTTCCAGAACTTTCCGATCCAAGACGAACCGGAAGCGTCTGACGTTGCGGTTACAGCCTCGAATGTGCGCAAGGATCTGACGGAATGGCAAGAACAGCATGCAACGTTGGTTCTCACCAATGTCAAGGAAATTTCAAGATTAAGATATGAACTATGTCCGAGAATTATGAAAGAAAGGATATTCTGGAGGATATATTTTACACTTGTTAGCAGTCATGTTGCTCCATACGAGAAGAAATACATGGAAGAGATTAAGCTGAAATCTGAAGAACAACGAAAAGCTGATGATGAAGCCAAGCAAACTCCGTCGGTTGGAGCCTCTGAAAAAGTTGAAGAGGCGGAAAGGAACCTGAAGGATGATGGTGACGAAAGCTTCGATGATGACTTCGACAAGATTGAAAACTCGGATGTCGAAGAAGAAAATTCCAAGTCCAAAGCCACAATTCATGGCATTACGCTGCAAGATCCCTACCACTGGATGGCCAACACCGCCGACCCTGATCTCGCCGACTACCTCCGTCGAGAAAACTTGTATGCCGAAGCTTTCATGGCCGACACTCAGATTCTGCAGCGCCGGCTCTTCTCCGAGATGACGAGTCGAATATCCACCAAGGTTTCCACTCCTCCTGAGCCTTGGGGACCCTGGTTTTACTACCAATACATCCCGGAGGGGAAGGAATACCCAGTTCTATGCCGTAGGCTACAGAACGAGAAAACCAATTGGTTAAAGAAACTTACCCAATTTGCTAAAGGAAATTCTGGGAAGCAGGAGGAAGTTTTACTTGATTGGAATGAAATTGCTAAACAATATGGCTATGTTCACGTGGGAACTTGTCGTGTTTCACCAGACCACAACTTTCTAGCATACACAGTTGATATTACAGGCAGTGAACACTTCATGCTTCAGATTAAAGACCTGAGAAGTGGACTGATGATTCCCAAGTTACAGGAGGGAGTTGTTTATATTATAGATGCTAACAACTGGTTAAGCGGTTTGCAAAGAATACACAAACGCATTCCGGGTATTCAATACTTTCTGGAACATCATTGTGGTTTCTTTTATATCCTAACAAATGCTCCTCTTGAAAAGAAAGGGGATTGTTCGAAGGAAGATTATTACGTAGCTCGATGTCGAGTTGAAGATATCAAGTCAGCAAATTGGCAGGATATCGTCCTTCAGAGCAAAGATTTCAGTATACATGACATGGACGTTTTTAGTGGACATCTTGTGCTTTTTGTCAATAAGAATGGTGTTCCAATGTTATGTTCAATCAATTTGCCTTTAGATGCTAATCATAAGCATCGTTTGGAGATCGAGAAACTCGACCCATGGTTTTTCCCTCTTCCCTCAAACTCCTGCAGCGTAGCTCCAGGATCGAACCATGACTTTACGAGCTCGTTATACCGTGTGGTGCTTTCGTCTCCAGTGATGCCTGATTTGATTGTTGATTATGATATGTCTAAAAGGGTCTTCTCGATCATTCAGCAAGAGGAAGTAGAAGTTAAGCATGATATTAAACTTAAAACATATCAACCAGATGCGTTGGGTATCGAGAAAGTTTCAGATGCGCAAAACAAAAGAGAAAACTTCGAGACTCGTGAATCCGAAACTTGGAAGGACTTTTCTGATTCATACTGTTGTGAGAGGAAGGAAGTTATATCACATGATGGAATCAGAGTACCCTTGACCATATTGTATTCCCCTTCGACTTTTCAGAAAGGACGGTCACCCGGAGTTCTACAAGGGTATGGAGCATATGGTGAGGTTCTTGATAAAAGTTGGTGTCCTTCTCGCCTGAGTTTACTTGATCGTGGTTTCGTGCTGGCATTTGCAGACATCAGGGGAGGTGGTGGTGGTGATTCTTCATGGCATAGATGTGGGAGTGGGCTTCAGAAACAAAATTCAATACAAGACTTTATCTTTTGTGCGAATTTTCTCATTGATAATGGCTATGTTCATAAGAATCGGCTGGGTTCCATTGGATACAGTGCAGGAGGCCTTCTTGTTGGAGCTGCTATCAACATGCATCCTGACCTGTTTGGAGCAGCCATTTTGAAGGTTAGTTTGAGCCATACACTTGCCTACTCATTGGTCTTCACATCTTGTAAAGTAGATAGGAAATGCATCTTGAAAGACCATCACTAA 2493 44.0 MEDLWKRAKSFAEEAAKKSQTLTSTSTLSELVSETAKKSKELAAEASKTADLIKTAAIKQADHLKSLNVADIIPPQLSSISIPNLSAPSPHSQSELEKFGLNDDLREFVSGFTPTTFQNFPIQDEPEASDVAVTASNVRKDLTEWQEQHATLVLTNVKEISRLRYELCPRIMKERIFWRIYFTLVSSHVAPYEKKYMEEIKLKSEEQRKADDEAKQTPSVGASEKVEEAERNLKDDGDESFDDDFDKIENSDVEEENSKSKATIHGITLQDPYHWMANTADPDLADYLRRENLYAEAFMADTQILQRRLFSEMTSRISTKVSTPPEPWGPWFYYQYIPEGKEYPVLCRRLQNEKTNWLKKLTQFAKGNSGKQEEVLLDWNEIAKQYGYVHVGTCRVSPDHNFLAYTVDITGSEHFMLQIKDLRSGLMIPKLQEGVVYIIDANNWLSGLQRIHKRIPGIQYFLEHHCGFFYILTNAPLEKKGDCSKEDYYVARCRVEDIKSANWQDIVLQSKDFSIHDMDVFSGHLVLFVNKNGVPMLCSINLPLDANHKHRLEIEKLDPWFFPLPSNSCSVAPGSNHDFTSSLYRVVLSSPVMPDLIVDYDMSKRVFSIIQQEEVEVKHDIKLKTYQPDALGIEKVSDAQNKRENFETRESETWKDFSDSYCCERKEVISHDGIRVPLTILYSPSTFQKGRSPGVLQGYGAYGEVLDKSWCPSRLSLLDRGFVLAFADIRGGGGGDSSWHRCGSGLQKQNSIQDFIFCANFLIDNGYVHKNRLGSIGYSAGGLLVGAAINMHPDLFGAAILKVSLSHTLAYSLVFTSCKVDRKCILKDHH 830
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8410648 8416957 - CmoCh04G016500.1 Cmo04g01650 380625

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g01650 830 PANTHER PROLYL OLIGOPEPTIDASE FAMILY PROTEIN 436 805 - -
Cmo04g01650 830 SMART wurzfinal6 137 189 IPR005607 -
Cmo04g01650 830 PRINTS Prolyl oligopeptidase serine protease (S9A) signature 777 797 IPR002470 GO:0004252|GO:0006508
Cmo04g01650 830 PRINTS Prolyl oligopeptidase serine protease (S9A) signature 693 711 IPR002470 GO:0004252|GO:0006508
Cmo04g01650 830 PRINTS Prolyl oligopeptidase serine protease (S9A) signature 747 766 IPR002470 GO:0004252|GO:0006508
Cmo04g01650 830 PRINTS Prolyl oligopeptidase serine protease (S9A) signature 719 743 IPR002470 GO:0004252|GO:0006508
Cmo04g01650 830 Gene3D alpha/beta hydrolase 242 326 IPR029058 -
Cmo04g01650 830 MobiDBLite consensus disorder prediction 205 245 - -
Cmo04g01650 830 PANTHER PROLYL OLIGOPEPTIDASE FAMILY PROTEIN 258 434 - -
Cmo04g01650 830 Gene3D - 436 614 - -
Cmo04g01650 830 SUPERFAMILY Peptidase/esterase 'gauge' domain 262 429 - -
Cmo04g01650 830 ProSiteProfiles BSD domain profile. 137 189 IPR005607 -
Cmo04g01650 830 SUPERFAMILY alpha/beta-Hydrolases 663 816 IPR029058 -
Cmo04g01650 830 Pfam Prolyl oligopeptidase family 714 816 IPR001375 GO:0006508|GO:0008236
Cmo04g01650 830 Pfam Prolyl oligopeptidase, N-terminal beta-propeller domain 436 607 IPR023302 GO:0004252
Cmo04g01650 830 Pfam Prolyl oligopeptidase, N-terminal beta-propeller domain 259 428 IPR023302 GO:0004252
Cmo04g01650 830 SUPERFAMILY BSD domain-like 106 194 IPR035925 -
Cmo04g01650 830 SUPERFAMILY Peptidase/esterase 'gauge' domain 436 618 - -
Cmo04g01650 830 MobiDBLite consensus disorder prediction 224 238 - -
Cmo04g01650 830 Pfam BSD domain 143 189 IPR005607 -
Cmo04g01650 830 Gene3D BSD domain 112 199 IPR035925 -
Cmo04g01650 830 PANTHER PROTEASE FAMILY S9A OLIGOPEPTIDASE 258 434 - -
Cmo04g01650 830 PANTHER PROTEASE FAMILY S9A OLIGOPEPTIDASE 436 805 - -
Cmo04g01650 830 Gene3D alpha/beta hydrolase 651 811 IPR029058 -
Cmo04g01650 830 Gene3D - 327 435 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g01650 - - - bhj:120081735 652.899
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01730 Cmo-Chr2:9868636 Cmo04g01650 Cmo-Chr4:8410648 2.22E-25 dispersed
Cmo04g01650 Cmo-Chr4:8410648 Cmo10g00296 Cmo-Chr10:1321980 7.69E-62 dispersed
Cmo12g01170 Cmo-Chr12:10591920 Cmo04g01650 Cmo-Chr4:8410648 6.58E-31 transposed
Cmo11g00233 Cmo-Chr11:1158379 Cmo04g01650 Cmo-Chr4:8410648 2.34E-54 wgd
Cmo18g01110 Cmo-Chr18:11509452 Cmo04g01650 Cmo-Chr4:8410648 2.02E-150 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g945 . . . . Bpe13g01395 . . . Cmo04g01650 . . . Car04g01628 . Sed08g1575 . Cpe01g01400 Bhi07g01449 Tan04g0961 Cmetu10g1342 Lac13g0407 Hepe10g1818 . . . . . . . . . Cone13ag0930 Cone19ag0923 Cone6ag0559 Cone9ag0566 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007009 2 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 2 1 1 3 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo04g01650 Cmo_Chr04 FPKM 15.18254 16.14834 29.226 26.717119 14.877851 16.57962 15.19402 17.416792 18.134279 18.827311