Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cmo04g01665 | ATGTCCGTATCGATTTCCAACTGCTTCTCTAATTTAATCTGCCAGGAGGATTCCTCCGGCGTCTTGTCCGGCGAGTCGCCGGGGTGTTCTTCCGACTTCGATTCGACGGCCTGCGTTGAGGAATCTATCGCCGTCTTCATCAAGGATGAGCGTCGCTTCGTCCCTGATTATGACTGTTTCTCGCGCTTCCAATCTCCATCGCTGGATGCGGCCGCTAGACTAGACTCTGTTGCATGGATTCTTAAGGTTCAAGCCTATTACGGTTTTCAGCCTTTGACAGCGTATCTCTCCGTCAACTACTTGGATCGCTTCCTTTGTTCACGCCGTTTGCCGATTCAAAATGTTCGTGGAGGGATGCTAGTGATCCAAACAAATGGGTGGCCATTGCAACTCCTCTCTGTTGCTTGCCTGTCACTGGCTGCTAAAATGGAGGAACCTCTTGTTCCCGCTTTACTAGATCTTCAGGTTGAGGGGGCTAAATATATATTTGAACCCAGAACAATATGCAGGATGGAGTTGTTGGTGCTGAGGGTATTGGATTGGCGGCTGCGTTCAGTAACGCCGTTCAATTTCATAGCATTCTTTGCGTGCAAGCTCGACCCATCGGGAGATTTCATCGGGTTTCTTATTTCAAGAGCAACAGAAATTATAGTATCGAATATCCGAGAGGTAATCTTTCTGGATAACTGGCCATCGTGTATTGCGGCAGCCGCCTTGCTTTGTGCAGCAAATGAAGTCCCGGGTTTGTCTGTTGTCAATCCAGAACATGCTGAATCATGGTGCAGCGGCCTGAGGAAAGAAAATATCACCGGCTGCTACCGGTTAATGCAAGAGATTGTGCTTGTTAGTAGCCGGAGCAAGTCCCCCAAAATCCTACCCGGCCAGTTTAGAGTGACTGTCCGTACTAGTATGACATCCAGCGACTTATCCTCCTACTCCTCTTCCTCATCTTCGTCATCACCAAACAAAAGGAGAAAATTAAACCAGAGCAGCGTCTGGATAGATGATGACAAAGGTAACACCGAAGAATGA | 1032 | 48.26 | MSVSISNCFSNLICQEDSSGVLSGESPGCSSDFDSTACVEESIAVFIKDERRFVPDYDCFSRFQSPSLDAAARLDSVAWILKVQAYYGFQPLTAYLSVNYLDRFLCSRRLPIQNVRGGMLVIQTNGWPLQLLSVACLSLAAKMEEPLVPALLDLQVEGAKYIFEPRTICRMELLVLRVLDWRLRSVTPFNFIAFFACKLDPSGDFIGFLISRATEIIVSNIREVIFLDNWPSCIAAAALLCAANEVPGLSVVNPEHAESWCSGLRKENITGCYRLMQEIVLVSSRSKSPKILPGQFRVTVRTSMTSSDLSSYSSSSSSSSPNKRRKLNQSSVWIDDDKGNTEE | 343 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 8468889 | 8471314 | - | CmoCh04G016650.1 | Cmo04g01665 | 380640 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cmo04g01665 | 343 | MobiDBLite | consensus disorder prediction | 305 | 343 | - | - | |
| Cmo04g01665 | 343 | Pfam | Cyclin, C-terminal domain | 186 | 287 | IPR004367 | - | |
| Cmo04g01665 | 343 | Gene3D | - | 56 | 184 | - | - | |
| Cmo04g01665 | 343 | PANTHER | CYCLINS | 25 | 329 | IPR039361 | - | |
| Cmo04g01665 | 343 | MobiDBLite | consensus disorder prediction | 305 | 328 | - | - | |
| Cmo04g01665 | 343 | SMART | Cyclin_C_2 | 186 | 321 | IPR004367 | - | |
| Cmo04g01665 | 343 | SMART | cyclin_7 | 78 | 177 | IPR013763 | - | |
| Cmo04g01665 | 343 | Pfam | Cyclin, N-terminal domain | 43 | 183 | IPR006671 | - | |
| Cmo04g01665 | 343 | SUPERFAMILY | Cyclin-like | 168 | 291 | IPR036915 | - | |
| Cmo04g01665 | 343 | ProSitePatterns | Cyclins signature. | 73 | 104 | IPR006671 | - | |
| Cmo04g01665 | 343 | MobiDBLite | consensus disorder prediction | 329 | 343 | - | - | |
| Cmo04g01665 | 343 | Gene3D | - | 47 | 250 | - | - | |
| Cmo04g01665 | 343 | CDD | CYCLIN | 73 | 176 | IPR013763 | - | |
| Cmo04g01665 | 343 | PANTHER | CYCLIN-D1-1 | 25 | 329 | - | - | |
| Cmo04g01665 | 343 | SUPERFAMILY | Cyclin-like | 34 | 183 | IPR036915 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cmo04g01665 | Cmo-Chr4:8468889 | Cmo05g00921 | Cmo-Chr5:7189219 | 1.82E-143 | dispersed | |
| Cmo04g00312 | Cmo-Chr4:1547610 | Cmo04g01665 | Cmo-Chr4:8468889 | 0 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cmo04g01665 | K18810 | - | csv:101209417 | 550.821 |