Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g01675 ATGGCTAGAACCCCTGTTTTCTCCCGCCGGCGAAGGTCCGATCAAATCGACGCTTTAGATCGCTTCCCCATCTCTGATTCCGAGGTCCATGTTCTCGCCGTTGATGACAGCCTCGTCGACCGTACAGTAATTGAGCGTCTCCTCCGCCTCACCGCTTGCCGAGTTACTGCAGTGGATAGTGGAATTAGAGCTCTACAATATCTCGGATTGCAAGATGAACCTAATTCCCAAGTTGGTTTTGATGGGTTGAAGGTTGATATGATTATCACCGATTACTGCATGCCCGGAATGACAGGCTACGAATTGTTGAAGAAAATTAAGGAATCTTCAACTCTGAGAGAGATTCCGGTGGTGATTATGTCGTCGGAAAACGTGGTGGCGAGGATAGACAGGTGTTTGGAGGAAGGGGCAGAGGATTTCATAGTGAAGCCGGTGAAATTATCAGATGTGAAGCGGCTCCGGGAATATATGGTGGGGGACGAAAAGATTGGAAGTGAAAGGAGTGGGAACAACAAAAGGAAGCTACGAGAACCGTGTGATGAAGCCTCATCATCACCGTCCATTTTATCACCAGCACCATCTTCTGATTCCTCTCCATCACCGTCAGATTCGGTTCAATCCATCACCCCATCATCGTCAGAGCCATCTTCTCCGACGTCCACTCCTCAATCGGACGACTCTAAATGA 687 48.76 MARTPVFSRRRRSDQIDALDRFPISDSEVHVLAVDDSLVDRTVIERLLRLTACRVTAVDSGIRALQYLGLQDEPNSQVGFDGLKVDMIITDYCMPGMTGYELLKKIKESSTLREIPVVIMSSENVVARIDRCLEEGAEDFIVKPVKLSDVKRLREYMVGDEKIGSERSGNNKRKLREPCDEASSSPSILSPAPSSDSSPSPSDSVQSITPSSSEPSSPTSTPQSDDSK 228
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8497777 8499139 + CmoCh04G016750.1 Cmo04g01675 380650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g01675 228 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR3-RELATED 11 227 - -
Cmo04g01675 228 MobiDBLite consensus disorder prediction 163 228 - -
Cmo04g01675 228 Gene3D - 29 195 - -
Cmo04g01675 228 Pfam Response regulator receiver domain 31 150 IPR001789 GO:0000160
Cmo04g01675 228 CDD REC_typeA_ARR 31 153 - -
Cmo04g01675 228 PANTHER TWO-COMPONENT RESPONSE REGULATOR 11 227 IPR045279 GO:0009736
Cmo04g01675 228 SMART REC_2 29 154 IPR001789 GO:0000160
Cmo04g01675 228 ProSiteProfiles Response regulatory domain profile. 30 158 IPR001789 GO:0000160
Cmo04g01675 228 MobiDBLite consensus disorder prediction 163 180 - -
Cmo04g01675 228 SUPERFAMILY CheY-like 29 154 IPR011006 -
Cmo04g01675 228 MobiDBLite consensus disorder prediction 183 228 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00099 Cmo-Chr4:525284 Cmo04g01675 Cmo-Chr4:8497777 1.81E-42 dispersed
Cmo04g01675 Cmo-Chr4:8497777 Cmo10g00165 Cmo-Chr10:747025 1.60E-65 dispersed
Cmo04g00318 Cmo-Chr4:1580019 Cmo04g01675 Cmo-Chr4:8497777 1.85E-122 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9645 PF00072 Response_reg 2.40E-21 CL0304 Cmo TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g01675 K14492 - csv:101209506 337.035