Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g01676 ATGCCTTTGCTGCTTCTGCTTCAGCTATGGCAGCTTCATCTCTTCCTCTTCTTCCTCTCTGTTTCTTCTGTTTGTTATTGCCAACTCACTCCCCCTCAAAATATCCAAACTTTCTACCCTTCCCCATTTATTCCTCAACCACCGTCGCCATTGTCCTCTCTTGTGCAACCGACGCCATCGTCCTCACTTAAGCATTGGCTGCCGTCGTCCACGTTAACGAGGACCATAACGACGGCTGTGGCTGTCACTGCAGTGAGTACGGCTCTGATTTCCACGTTGTTCTTCTTCTTGATCCAGAGATATCTGATCAGAAGAAAACGAAATGTAGAGGTGGCAAATTCGGGTCCGGTTCCTGGACCGATCTTGCAGCCGGCGGTTGCTCAGAGTGAATCTTCGTGTCCTGATGGGAATCTTAAAGGGTATATTGTGGATGAAAATGGATTGGATGTGATTTATTGGAAGAGACTTGAAAGAAGGAATTCCAGTAATAGCTTTGATTGGAGTGATAGACAAGAAAATGTTATGAAAAATCGAAGCAAAAAGACGAAGCCTGTTCAAGAAGTTCCTCTGCTTCGAGGAAACGCTTCGCCGGAGGATGAAGAACCCAGTTGGATTACATCTCCTTCGCCGCCTCAGATTAACCACCCTCCGCCGTTTACTGGGAATTCTGTTCAGGCAGTTGGAAAACCATCAAGTAGTTCAATTCATTCATCAATAGAGCATTCACAATCTCTCAGGGCCGTTCCTTACGACAAAAGCTCTGTTCCAACATCGCCGCCGCCAGTTCCAGCCAAGACCAATACAAGACCACCACCGCCACCACCTCCCATCCCAGTCAAGACCAATTCAAGACTGCCCCCACTGCCTCCTATTCAAGTCCAGACCAATGCAGCACCACCACCTCCGCAGCCGCCCAATGCCGGCGCTTCAAAAGGGGGTAATTCCTCTGGCGAGGCTTCATCAGTCGAGAATGGTCAGGTTAAATTCATACCCCTGCATTGGGATAAAGTGAACACCGCAAATACCGATCATTCTATGGTTTGGGATAAAATGAACGGCGGTTCTTTCAAATTTGATGGGGATCTTATGGAAGCTCTGTTTGGATATGTCGCAACCGACCGGAAATCCCCCCGGAACGATGCTAGTTCTTCAGCAAACGCCTTTGGCCGGAACTCAGGGCCGTCGCAAACTTTCATTCTTGAACAGAAGAAATCTCAGAACATAGCCATTATAATCAAGTCCTTGACCATTCCTCGCAACGAAATCCTCGATGCGCTCAACGAAGGTCAAGGCCTCGAAACAGATAATCTTGAAAAACTCACAAGAATTGCTCTGACCCAAAAAGAAATTTCCCAAATTCTTGAGTATGAAGAAGACCCCCAGAAGCTTGCTGATGCTGAATCTTTCCTTTACCATCTTCTCACATCGGTTCCAACAGCCTTTACGCGTTTCAACGCCATGCTTTTCCGATTGAATTTCAGCTCCGAGATTATCCATCTCAAGAAATCTCTACGAACTCTGGAATCTGCCTGCAAGGAGCTTAGATCTCGAGGGTTGTTTTTAAAATTGCTTGAAGCAATTCTCAAAGCTGGGAATCGGCTGAATGCAGGAACTGCAAGAGGAAATGCCAGAGCTTTCAACCTTACAGCTCTCCGCAAGCTCTCTGATGTTCAAAGCACTGATGGGAAAACCACTTTGCTTCACTTTGTGGTGAAAGAAGTCATCAGAACAGAAGGGAAAAAGTGTGTTTTAAACAGGAACAAGAGCATGAGCCGTAACAACAGCAGCAATAGCAGTGAGAGCAGCTTTAGCAGCCGCGAAAAATCGACTTCGAAAGAGGACGCAGTAAAGGAATATATGATGTTGGGACTGCCAGTGGTGGGAGGTCTAAGCGCTGAGCTCTCTAATGTAAGGAAAGCGGCGGCAATCGACTACGAGAGTGTTGCCAAGGCTGCGTCATCTCTGACTAGCCCAACTCTAGAAATCCGGCAGCTTTTGATTCAAATTGGGAACAATGGAGGTGGGTTTACAAAGGAAATGAGAGGGTTTCTTGAGGCAGCAGAGGATGAGCTGAAGGTGGCGAGAGAAGAACAGACGAGAGTGATGGAGCTAGTGATGAAGACAACAGAGTATTATCAGGCTCAAAGTTCAAAAGATAATGAAGCAAATAGGCTTCAATTATTCATCATAGTGAAAGATTTCCTAGAAATGGTAGATCGGGTATGTATTGAAATTGCCCGAGAACTCCAGCAGAGATCGTCTGCCGTCGATGTGGGTTCGTCACAGGTGAGATCAAAGACTGTCTTCCCTAGCTTGCCGGAAAATTTTATGTCGGACAAGTCCAAAGGCAGTTCTAGTGATTCAGATGAGGAATTCTGA 2379 46.53 MPLLLLLQLWQLHLFLFFLSVSSVCYCQLTPPQNIQTFYPSPFIPQPPSPLSSLVQPTPSSSLKHWLPSSTLTRTITTAVAVTAVSTALISTLFFFLIQRYLIRRKRNVEVANSGPVPGPILQPAVAQSESSCPDGNLKGYIVDENGLDVIYWKRLERRNSSNSFDWSDRQENVMKNRSKKTKPVQEVPLLRGNASPEDEEPSWITSPSPPQINHPPPFTGNSVQAVGKPSSSSIHSSIEHSQSLRAVPYDKSSVPTSPPPVPAKTNTRPPPPPPPIPVKTNSRLPPLPPIQVQTNAAPPPPQPPNAGASKGGNSSGEASSVENGQVKFIPLHWDKVNTANTDHSMVWDKMNGGSFKFDGDLMEALFGYVATDRKSPRNDASSSANAFGRNSGPSQTFILEQKKSQNIAIIIKSLTIPRNEILDALNEGQGLETDNLEKLTRIALTQKEISQILEYEEDPQKLADAESFLYHLLTSVPTAFTRFNAMLFRLNFSSEIIHLKKSLRTLESACKELRSRGLFLKLLEAILKAGNRLNAGTARGNARAFNLTALRKLSDVQSTDGKTTLLHFVVKEVIRTEGKKCVLNRNKSMSRNNSSNSSESSFSSREKSTSKEDAVKEYMMLGLPVVGGLSAELSNVRKAAAIDYESVAKAASSLTSPTLEIRQLLIQIGNNGGGFTKEMRGFLEAAEDELKVAREEQTRVMELVMKTTEYYQAQSSKDNEANRLQLFIIVKDFLEMVDRVCIEIARELQQRSSAVDVGSSQVRSKTVFPSLPENFMSDKSKGSSSDSDEEF 792
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8502770 8505232 + CmoCh04G016760.1 Cmo04g01676 380651

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g01676 792 SMART it6_source 319 753 IPR015425 -
Cmo04g01676 792 MobiDBLite consensus disorder prediction 163 321 - -
Cmo04g01676 792 MobiDBLite consensus disorder prediction 254 285 - -
Cmo04g01676 792 MobiDBLite consensus disorder prediction 292 307 - -
Cmo04g01676 792 Pfam Formin Homology 2 Domain 322 739 IPR015425 -
Cmo04g01676 792 Coils Coil 497 517 - -
Cmo04g01676 792 Coils Coil 684 704 - -
Cmo04g01676 792 MobiDBLite consensus disorder prediction 218 251 - -
Cmo04g01676 792 Gene3D Formin, FH2 domain 341 762 IPR042201 -
Cmo04g01676 792 MobiDBLite consensus disorder prediction 763 792 - -
Cmo04g01676 792 MobiDBLite consensus disorder prediction 763 782 - -
Cmo04g01676 792 MobiDBLite consensus disorder prediction 586 605 - -
Cmo04g01676 792 PANTHER FORMIN-LIKE PROTEIN 4 10 788 - -
Cmo04g01676 792 SUPERFAMILY Formin homology 2 domain (FH2 domain) 271 752 - -
Cmo04g01676 792 MobiDBLite consensus disorder prediction 163 185 - -
Cmo04g01676 792 PANTHER FORMIN-RELATED 10 788 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Cmo04g01676 792 ProSiteProfiles Formin homology-2 (FH2) domain profile. 319 764 IPR015425 -
Cmo04g01676 792 MobiDBLite consensus disorder prediction 585 610 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g01676 - - - mcha:111019114 944.495
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01676 Cmo-Chr4:8502770 Cmo05g00917 Cmo-Chr5:7063695 5.04E-128 dispersed
Cmo05g00951 Cmo-Chr5:7646062 Cmo04g01676 Cmo-Chr4:8502770 3.93E-10 dispersed
Cmo05g00906 Cmo-Chr5:6956646 Cmo04g01676 Cmo-Chr4:8502770 1.62E-12 transposed
Cmo04g00319 Cmo-Chr4:1583995 Cmo04g01676 Cmo-Chr4:8502770 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g795 . . . . . Bpe10g00820 . Bma15g00202 Cmo04g01676 . . . . . Sed08g1729 . Cpe01g01416 Bhi07g01666 Tan04g1167 Cmetu03g1719 Lac13g0243 Hepe10g1681 . . Cla05g02507 Cam05g2691 Cec05g2724 Cco05g2759 Clacu05g2694 Cmu05g2548 Cre05g2663 . . Cone6ag0623 Cone9ag0638 Lsi04g00506 Csa05g02377 Chy10g00942 Cme10g00485 . . . . Bpe11g01744 . . . . . . Cma04g01601 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007048 1 1 1 2 2 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 2 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo04g01676 Cmo_Chr04 FPKM 0.0 0.0 0.0 0.0 2.291068 2.419034 2.678113 0.0 0.0 0.0