Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g01680 ATGAAGAGGTCTAGAGACGACGTTTATATGGGCTCACAACTCAAGCGTCCTTCGATTTCCACTCGTCCAGAAGCATCTACACAACCCCAAATGTCTGGAGGAGGAAGTGCCCAGAAATTAACCACTAATGACGCCCTAGTATATCTCAAGAGAGTGAAGGACATATTTCAAGACAAGAGACAACAGTATGAAGACTTCCTTGAAGTTATGAAAGATTTCAAGGCCCAAAGAATTGATACTGCGGGAGTCATTGCAAGAGTAAAGGATTTGTTTAAAGGCCATCGAGACCTCATTTTGGGCTTCAATACATTCTTGCCCAAAGGATATGAGATCACTCTTCCACTGGATGATGATCAACCTACACAAAAGAAACCTGTCGAGTTTGAAGAAGCTATCAATTTTGTGAACAAGATAAAGACACGATTTCAAGGCGATGATCATGTTTATAAATCATTTTTAGACATTTTAAATATGTACAGAAAGGAAAACAAGTCAATCACTGAGGTCTACCAGGAGGTTGCTGCACTTTTCCAAGAGCACCCAGATTTGCTTGTTGAGTTTACTCATTTTCTTCCAGATTCTTCAGCCACAGGATCTGTTCACTATAGCTCTGGAAGAAGTTTAATGCTCCGTGATAGGCATTCTGCCATGCCCACTATGCGGCAAATGCAAGTTGACCGGAAAGATCGAACTATTGTGTCCCATGCTGAACGTGACCTTAGTGTTGACCGTCCGGAACCAGACCATGATAGAGCTCTAATGAAACTGGACAAAGATCAACGTAGGCGTGGTGAGAAGGAAAAGGAAAGAAGAGATGATAGAGATAGGAGAGAACATGATCGGGATAGGGTTGACAGAGACTATGAGCATGATGGAAGACGGGACTTTAGCACGCATCGGTTTCCCCACAAGAGGAAAACAGCCCGTAGGATTGACGACTCTACTGCCGATCAATTGCATCCAGGTGGAGAAGGTGATGAAAATTTTGGCGTACTTCCCATCTCTTCTTATGATGATAAAAATTCTGCAAAGAGTATATACAGCCAGGAGTTTGCTTTCTGTGAAAGAGTCAAAGAGAAGTTGAGAAATGCTGAAGATTACCAGGAATTTTTGAAATGTCTCCATATCTATAGCAAGGAGATAATTACCCGAGCAGAACTTCAATCTTTGATGGGTGATTTACTTGGAAGATATTCTGATCTTATGGATGGTTTCAATGAATTTTTGGCACGATGCGAGAGGAATGATGGATTTCTTGCTGGTGTCATGAGTAGAAAGTCATTATGGAATGAAGGAAGTTTGCCTAGAACAGTGCAAGTGGAGGATAGGGACAGAGATAGAGACCGTGAACGTGAGAAAGAGGATATTTCTAAAGATAGAGATCGTGAAAATCGAGAAAGAGATAGACTTGAAAAGAATGCTGCATTTGGAAGTAAAGATATAGTAGGTCATCGGATGTCTGTGTTTTCTAGCAAAGACAAGTATTTGGCGAAGCCAATAAATGAACTCGATCTATCAAACTGCGAACGTTGCACTCCCAGTTACCGCCTTCTGCCAAAAAATTATCCTATACCTTCGGCCAGCCAAAGAACAGATCTTGGTGATCAAGTGTTGAATGATCACTGGGTATCTGTCACTTCAGGAAGCGAGGATTACTCTTTTAAACATATGCGCAAAAACCAGTATGAAGAAAGCCTTTTCCGATGCGAAGATGACAGGTTTGAACTTGACATGTTGCTGGAGTCTGTAAATGTGACTACTAAGCGTGTTGAAGAACTACTTGAAAGGATCAACAACAATGTGATCAAAGCAGACTGTCCAATCACAATTGAGGATCACCTCACTGCTCTAAATCTGAGGTGCATCGAACGATTATATGGTGACCATGGGCTTGATGTTATGGATGTGTTGAGGAAGAATGCGTCTCTTGCTCTGCCAGTTATTTTGACCCGATTGAAGCAGAAACAGGAAGAATGGGCACGGTGTCGTTATGACTTCAATAAAGTTTGGGCTGAAATATATGCTAAGAACTATCATAAGTCACTTGATCATCGTAGCTTCTACTTCAAGCAGCAAGACACAAAAAGCTTGAGCACTAAAGCCTTGTTGGCGGAGATCAAAGAGATCAGTGAGAAGAAGCGAAAGGAAGATGACGTGTTGCTTGCTATTGCTGCTGGAAATAGACGACCCATAATTCCGAATTTGGAATTTGAGTATCCTGATCCAGAGCTTCATGAAGATCTATATCAACTAATCAAATATTCCTGTGGAGAAGTTTGCTCGACGGAACAATTAGATAAGGTTATGAAGGTATGGACAACCTTCCTTGAGCCCATGCTTGGTGTTCCTTCTCGACCTCATGGTGCTGAGGACACCGAAGATGTTATTAAGGCAAAGATCCATCCTACCAAGAGTGCTACTATTAATGTAGTAGAGAGTGATGGCAGTCCTGGTGGGGGTGCCACTATGATGCACCCGAAGCCATTGAATTCGTCTAGAAATGGAGATGAAAGTATTCCACCTGAACAATCAAGTTCTTGCAGGACTTGGCCCTTGAATGGGGACAATGGGGTCAAAGAAGATAGTTTCCATGATGCAGATCGTATTGTACGGAAGGGTGATCCTTTCTGCAGTAGTTCCCAACACAATAAAATTCAGGATAATGCACCCGTGACTGATGAATTGTCAGGAGTAAGTAAACAAGACAATTCTACCGAATGCTTTGTCAATTCAAATGTATCCCTTGCAACTGCAGCAGAGCAAAGCAATGGAAAAACTAACATAGAAAACACATCAGGATTGAGCACTACTCCTTCGCGGCTTGGAAATAGTGCCGTTGAGAGTGGAATTGAGTTACCTTCCTTAGAGATTGGGGGCCCTACAAGACAAATTCTAACTGTGAATGGCACAGTCGCAGATGGCATAAAAGGCCACAGATATGCTGATGAGTCTGTTAGACACTTAAAAATTGAAAGGGAAGAGGGTGAATTATCTCCAAACGGAGATTTTGAAGAAGATAATTTTGCCAATTATGACGGAGAATTGAAAGCTCTGCCAGAAAAGGAAGCTGTTGCTGGCAGGCAATATCCAAGCACCCGAGGTGAAGAAGAATTATGCTACAGAGAGGCTGGTGGGGAAAATGATGCTGATGCTGATGATGAAGGGGAGGAAAGTGCTCAAAGGTCATCAGAGGAGAGTGAAAATGCCTCTGAAAATGGTGATGTTTCTGCAAGTGATTCTGGTGATGGGGAGGATTGTTCTCGCGAAGATCATGAGGATGGAGAACATGATGATAATAAGGCTGAGAGTGAAGGTGAGGCAGAAGGGATGGCCGATGCCCATGACGTGGAAGGAGATGGAACATCTATACCCTTCTCTGAACGCTTTCTATTGACTGTAAAGCCTCTTGCCAAGCATGTTCCTCCCATGTTGCATGAAGAAGGAAGGGAGTCTCATGTATTTTATGGAAACGACTCTTTTTATGTGCTATTTAGGCTCCACCAGACACTGTATGAGAGAATACAATCTGCAAAGATCAACTCTTCATCCTCAGAGAGGAAATGGAGGGCCTCAAGTGATACAACTCCCACGGATCTATATGCCAGGTTCATGAATGCACTTTATAGTCTACTGGACGGTTCCTCTGATAACACAAAGTTTGAGGATGATTGCCGAGCCACTATCGGAACCCAGTCATATGTTCTATTCACATTAGACAAACTAATTTATAAACTTGTCAAGCAGCTTCAAGCAGTTGCCTCAGATGAAATGGATAACAAACTTCTCCAACTATATGCGTATGAAAAATCAAGAAAAACGGGAGGATTTATTGATGCAGTTTATCATGAAAATGCTCGCGTACTTCTTCATGATGAGAATATCTATCGCATAGAACGATCATCCACACCAACTCATCTTTCTATTCAGCTTATGGACTATGGCTACGATAAGCCTGAAGTAACTGCCGTTACGATGGACCCCATTTTTTCCTCTTATCTGCATAATGATTTCTTCTCAGTTCTCCCTGAGAAAAAGGTGAAGTCAGGGATCTTCTTGAAGAGAAACAAACGTAAATATGCCTGTGGCGATGAGAATTCTGCCGCATGCCATGCTTTGGAAGAGCTTAAAATTGTAAATGGTCTGGAGTGTAAAATTGCTTGCAATTCATCGAAGGTTTCATACGTTTTAGATACAGAGGACTTTTTATTTCGTAGAAATAGCAAAAGGAAACGTCTGCATGGAAATAGCTCATGCGACGACCAGTCGAAGTCTTCCAGTGGGGATTCAAGTAGTAGGAGGGTGCAGAAGTTCCACAAGCTACTTGAGAACTCATGA 4335 42.19 MKRSRDDVYMGSQLKRPSISTRPEASTQPQMSGGGSAQKLTTNDALVYLKRVKDIFQDKRQQYEDFLEVMKDFKAQRIDTAGVIARVKDLFKGHRDLILGFNTFLPKGYEITLPLDDDQPTQKKPVEFEEAINFVNKIKTRFQGDDHVYKSFLDILNMYRKENKSITEVYQEVAALFQEHPDLLVEFTHFLPDSSATGSVHYSSGRSLMLRDRHSAMPTMRQMQVDRKDRTIVSHAERDLSVDRPEPDHDRALMKLDKDQRRRGEKEKERRDDRDRREHDRDRVDRDYEHDGRRDFSTHRFPHKRKTARRIDDSTADQLHPGGEGDENFGVLPISSYDDKNSAKSIYSQEFAFCERVKEKLRNAEDYQEFLKCLHIYSKEIITRAELQSLMGDLLGRYSDLMDGFNEFLARCERNDGFLAGVMSRKSLWNEGSLPRTVQVEDRDRDRDREREKEDISKDRDRENRERDRLEKNAAFGSKDIVGHRMSVFSSKDKYLAKPINELDLSNCERCTPSYRLLPKNYPIPSASQRTDLGDQVLNDHWVSVTSGSEDYSFKHMRKNQYEESLFRCEDDRFELDMLLESVNVTTKRVEELLERINNNVIKADCPITIEDHLTALNLRCIERLYGDHGLDVMDVLRKNASLALPVILTRLKQKQEEWARCRYDFNKVWAEIYAKNYHKSLDHRSFYFKQQDTKSLSTKALLAEIKEISEKKRKEDDVLLAIAAGNRRPIIPNLEFEYPDPELHEDLYQLIKYSCGEVCSTEQLDKVMKVWTTFLEPMLGVPSRPHGAEDTEDVIKAKIHPTKSATINVVESDGSPGGGATMMHPKPLNSSRNGDESIPPEQSSSCRTWPLNGDNGVKEDSFHDADRIVRKGDPFCSSSQHNKIQDNAPVTDELSGVSKQDNSTECFVNSNVSLATAAEQSNGKTNIENTSGLSTTPSRLGNSAVESGIELPSLEIGGPTRQILTVNGTVADGIKGHRYADESVRHLKIEREEGELSPNGDFEEDNFANYDGELKALPEKEAVAGRQYPSTRGEEELCYREAGGENDADADDEGEESAQRSSEESENASENGDVSASDSGDGEDCSREDHEDGEHDDNKAESEGEAEGMADAHDVEGDGTSIPFSERFLLTVKPLAKHVPPMLHEEGRESHVFYGNDSFYVLFRLHQTLYERIQSAKINSSSSERKWRASSDTTPTDLYARFMNALYSLLDGSSDNTKFEDDCRATIGTQSYVLFTLDKLIYKLVKQLQAVASDEMDNKLLQLYAYEKSRKTGGFIDAVYHENARVLLHDENIYRIERSSTPTHLSIQLMDYGYDKPEVTAVTMDPIFSSYLHNDFFSVLPEKKVKSGIFLKRNKRKYACGDENSAACHALEELKIVNGLECKIACNSSKVSYVLDTEDFLFRRNSKRKRLHGNSSCDDQSKSSSGDSSSRRVQKFHKLLENS 1444
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8516067 8525696 - CmoCh04G016800.1 Cmo04g01680 380655

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g01680 1444 MobiDBLite consensus disorder prediction 827 852 - -
Cmo04g01680 1444 MobiDBLite consensus disorder prediction 1411 1444 - -
Cmo04g01680 1444 Pfam Sin3 family co-repressor 509 600 IPR013194 -
Cmo04g01680 1444 MobiDBLite consensus disorder prediction 1 38 - -
Cmo04g01680 1444 Gene3D Paired amphipathic helix 44 106 IPR036600 GO:0006355
Cmo04g01680 1444 SUPERFAMILY PAH2 domain 122 193 IPR036600 GO:0006355
Cmo04g01680 1444 Pfam Paired amphipathic helix repeat 62 105 IPR003822 GO:0006355
Cmo04g01680 1444 Pfam Paired amphipathic helix repeat 147 191 IPR003822 GO:0006355
Cmo04g01680 1444 Pfam Paired amphipathic helix repeat 365 409 IPR003822 GO:0006355
Cmo04g01680 1444 SUPERFAMILY PAH2 domain 37 107 IPR036600 GO:0006355
Cmo04g01680 1444 MobiDBLite consensus disorder prediction 1045 1121 - -
Cmo04g01680 1444 SMART hdac_interact2seq4b 507 607 IPR013194 -
Cmo04g01680 1444 MobiDBLite consensus disorder prediction 223 298 - -
Cmo04g01680 1444 Gene3D Paired amphipathic helix 122 195 IPR036600 GO:0006355
Cmo04g01680 1444 MobiDBLite consensus disorder prediction 214 330 - -
Cmo04g01680 1444 MobiDBLite consensus disorder prediction 814 852 - -
Cmo04g01680 1444 ProSiteProfiles PAH domain profile. 124 194 IPR003822 GO:0006355
Cmo04g01680 1444 Gene3D Paired amphipathic helix 340 413 IPR036600 GO:0006355
Cmo04g01680 1444 ProSiteProfiles PAH domain profile. 38 108 IPR003822 GO:0006355
Cmo04g01680 1444 MobiDBLite consensus disorder prediction 1081 1115 - -
Cmo04g01680 1444 ProSiteProfiles PAH domain profile. 343 412 IPR003822 GO:0006355
Cmo04g01680 1444 Pfam C-terminal domain of Sin3a protein 1154 1402 IPR031693 -
Cmo04g01680 1444 MobiDBLite consensus disorder prediction 920 942 - -
Cmo04g01680 1444 Coils Coil 453 473 - -
Cmo04g01680 1444 SUPERFAMILY PAH2 domain 341 410 IPR036600 GO:0006355
Cmo04g01680 1444 MobiDBLite consensus disorder prediction 14 38 - -
Cmo04g01680 1444 MobiDBLite consensus disorder prediction 439 467 - -
Cmo04g01680 1444 PANTHER SIN3B-RELATED 1 439 IPR039774 GO:0003714
Cmo04g01680 1444 PANTHER PAIRED AMPHIPATHIC HELIX PROTEIN SIN3-LIKE 2 ISOFORM X1 481 1420 - -
Cmo04g01680 1444 PANTHER PAIRED AMPHIPATHIC HELIX PROTEIN SIN3-LIKE 2 ISOFORM X1 1 439 - -
Cmo04g01680 1444 PANTHER SIN3B-RELATED 481 1420 IPR039774 GO:0003714
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g01680 K11644 SIN3A; paired amphipathic helix protein Sin3a - csv:101208532 2615.11
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01680 Cmo-Chr4:8516067 Cmo05g00936 Cmo-Chr5:7375184 0 dispersed
Cmo04g00324 Cmo-Chr4:1600542 Cmo04g01680 Cmo-Chr4:8516067 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g802 . Blo16g01142 . Bda11g01246 Bpe13g01441 Bpe10g00817 . Bma15g00207 Cmo04g01680 . . . . . Sed01g4034 . Cpe01g01419 Bhi07g01656 Tan04g1162 . . . . . Cla05g02504 Cam05g2688 Cec05g2721 Cco05g2756 Clacu05g2691 Cmu05g2545 Cre05g2660 Cone13ag1005 Cone19ag0999 Cone8ag0633 Cone12ag0617 Lsi04g00502 Csa05g02381 Chy10g00946 Cme10g00481 . . Bda07g01576 Bda11g01246 Bpe11g01747 . Bma01g00071 . . . . Cma04g01604 . Car04g01646 . . . . . . . . . . . . . . . . . . Csa05g01727 Chy09g00667 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003861 2 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 3 2 2 45
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9646 PF16879 Sin3a_C 6.30E-58 No_clan Cmo TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo04g01680 Cmo_Chr04 FPKM 3.123411 3.487331 4.097765 4.661305 21.679266 22.290497 23.204884 5.081608 4.870775 4.776117