Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g01686 ATGAACGCCCCTCGCACGTGTTCGCTTTGTGGCAACAATGGCCATAACTCCCGCACGTGTCCGGAGGGAGACGGTGGCGGTGCCAGCGGCGCCGGCGGATTCATGTTGTTCGGGGTCAGGCTGACCACGACCGAGGGAAGTAGCTCGTTTAGAAAGAGTGTTAGTATGAATAATCTGTCCCAGTTCGACCAGCCTCTAAGTCAGGACTCCAACAACGCCGATGCCGGATATGCTTCCGACGACGTCGTTCACCCATCCGACCGTTGCCGCGGCCGAAAAAGAGGGATTCCGTGGACAGAGGAAGAACATCGGCTGTTCTTGTTGGGATTACAGAAGGTTGGGAAGGGAGATTGGAGAGGGATTTCGAGGAATTTTGTGAAGACACGTACGCCGACTCAGGTGGCTAGTCATGCTCAGAAATACTTCCTCCGCCGGAATAATTTCAATCGGAGACGCCGTAGATCCAGCCTTTTCGACATCACCACTGACACTTTCCCGAGCTCATCCATGGAAGACGATTTGGTATTTTCCGGCCACGAGGCTCTGCCGCCACCGTTACCACCATCGCAGCCGCTAAAAGACAACAAACCCGGAAATTTCCTACTCAAAATTCATCCAGTGAAACCACTTCCTCCGGCCGGCGATGACAGCAACGCCGAGAACACAATCAGTTCCAAAATCCTTCGTCCAATACCAATGCTTCCTCTGTCTCCATACCCAAAATTCGCTCAATTAAACATTAACGACAGAACGCCGGAAGACCCTTTGCCTCTGACTTTGAAGCTCTCTACTTCACACCCGGAGGCACAATCTCCGACAGCGGCTTCACAGTCGTCCGGCAGTTTCCAGACAATGTCCGGCGGCGGAGACAGTATCGACATTGTCAGTGTTGCTTGA 897 53.18 MNAPRTCSLCGNNGHNSRTCPEGDGGGASGAGGFMLFGVRLTTTEGSSSFRKSVSMNNLSQFDQPLSQDSNNADAGYASDDVVHPSDRCRGRKRGIPWTEEEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRRNNFNRRRRRSSLFDITTDTFPSSSMEDDLVFSGHEALPPPLPPSQPLKDNKPGNFLLKIHPVKPLPPAGDDSNAENTISSKILRPIPMLPLSPYPKFAQLNINDRTPEDPLPLTLKLSTSHPEAQSPTAASQSSGSFQTMSGGGDSIDIVSVA 298
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8554130 8555725 + CmoCh04G016860.1 Cmo04g01686 380661

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g01686 298 Pfam Myb-like DNA-binding domain 97 142 IPR001005 -
Cmo04g01686 298 ProSiteProfiles Zinc finger CCHC-type profile. 7 22 IPR001878 GO:0003676|GO:0008270
Cmo04g01686 298 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 93 144 IPR006447 GO:0003677
Cmo04g01686 298 MobiDBLite consensus disorder prediction 263 290 - -
Cmo04g01686 298 MobiDBLite consensus disorder prediction 61 75 - -
Cmo04g01686 298 MobiDBLite consensus disorder prediction 177 199 - -
Cmo04g01686 298 CDD SANT 97 141 IPR001005 -
Cmo04g01686 298 PANTHER TRANSCRIPTIONAL ADAPTOR 2 ADA2 -RELATED 48 298 - -
Cmo04g01686 298 SMART sant 94 144 IPR001005 -
Cmo04g01686 298 ProSiteProfiles Myb-like domain profile. 90 142 IPR001005 -
Cmo04g01686 298 PANTHER KIN2 48 298 - -
Cmo04g01686 298 MobiDBLite consensus disorder prediction 246 298 - -
Cmo04g01686 298 MobiDBLite consensus disorder prediction 61 82 - -
Cmo04g01686 298 SUPERFAMILY Homeodomain-like 91 147 IPR009057 -
Cmo04g01686 298 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 90 146 IPR017930 -
Cmo04g01686 298 ProSiteProfiles SANT domain profile. 98 146 IPR017884 -
Cmo04g01686 298 Gene3D - 96 148 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g01686 - - - csv:101207806 454.907
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01686 Cmo-Chr4:8554130 Cmo06g00817 Cmo-Chr6:4432459 6.39E-57 dispersed
Cmo11g00129 Cmo-Chr11:653243 Cmo04g01686 Cmo-Chr4:8554130 2.02E-43 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g806 . . . . . . . . Cmo04g01686 . . . . . Sed04g0666 . Cpe01g01422 Bhi07g01651 Tan04g1157 Cmetu10g0115 Lac13g0251 Hepe10g1689 . . Cla05g02500 Cam05g2684 Cec05g2717 Cco05g2752 Clacu05g2687 Cmu05g2541 Cre05g2656 . . . Cone12ag0614 . Csa05g02385 Chy10g00949 Cme10g00477 . . . . . . . . . . . Cma04g01608 . Car04g01650 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013797 0 1 0 0 0 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 2 1 1 25
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9647 PF00249 Myb_DNA-binding 1.70E-10 CL0123 Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo04g01686 Cmo_Chr04 FPKM 0.0 0.0 0.445763 0.0 26.42704 25.821781 24.394258 0.0 0.070953 0.131785