Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g01700 ATGGGAGCAAGCTTTACAATCCCACGTTCAAAATCTTCCAATGCAACATTACAAGCAATGACTCCCACCATTGTGGAGTGCCACAACAAAGCAGAGTGGACAGCTCGTTTGGAAGCCACAAGGGAAACAAACAAGCTTATGGTGATTGACTTCACTGCTGCATGGTGTGGACCTTGTCGACAAATGGAGCCGACCATCAAGGAGTTTGCTTCGAGGTTCAAGGATGTTGAGTTCGTCAAAATCGACGTCGATGAGTTGATGGATGTTGCAAAGGAATATGGAGTGGACGCAATGCCAACATTCATACTGATTAAGAAGGGGAAGGTAGTTGATAAGGTGGTCGGCGCCAGGAAGGATGACCTGCAGAAGAAGATTGAGAATCATGGTAAATATTGA 396 45.71 MGASFTIPRSKSSNATLQAMTPTIVECHNKAEWTARLEATRETNKLMVIDFTAAWCGPCRQMEPTIKEFASRFKDVEFVKIDVDELMDVAKEYGVDAMPTFILIKKGKVVDKVVGARKDDLQKKIENHGKY 131
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8610750 8611498 - CmoCh04G017000.1 Cmo04g01700 380675

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g01700 131 Pfam Thioredoxin 26 126 IPR013766 -
Cmo04g01700 131 PRINTS Thioredoxin family signature 47 55 - -
Cmo04g01700 131 PRINTS Thioredoxin family signature 55 64 - -
Cmo04g01700 131 PRINTS Thioredoxin family signature 94 105 - -
Cmo04g01700 131 CDD TRX_family 37 104 - -
Cmo04g01700 131 Gene3D Glutaredoxin 7 130 - -
Cmo04g01700 131 PANTHER THIOREDOXIN 17 128 - -
Cmo04g01700 131 PANTHER THIOREDOXIN H7 17 128 - -
Cmo04g01700 131 SUPERFAMILY Thioredoxin-like 18 128 IPR036249 -
Cmo04g01700 131 ProSitePatterns Thioredoxin family active site. 48 66 IPR017937 -
Cmo04g01700 131 ProSiteProfiles Thioredoxin domain profile. 6 130 IPR013766 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g01700 K03671 trxA; thioredoxin 1 - csv:101205407 228.409
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo04g01700 Cmo18g01209 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01700 Cmo-Chr4:8610750 Cmo01g01998 Cmo-Chr1:14111135 1.92E-38 dispersed
Cmo09g00766 Cmo-Chr9:3880142 Cmo04g01700 Cmo-Chr4:8610750 7.59E-97 transposed
Cmo11g01066 Cmo-Chr11:5932847 Cmo04g01700 Cmo-Chr4:8610750 3.85E-38 wgd
Cmo14g00618 Cmo-Chr14:3116941 Cmo04g01700 Cmo-Chr4:8610750 2.80E-39 wgd
Cmo18g01209 Cmo-Chr18:12046951 Cmo04g01700 Cmo-Chr4:8610750 9.49E-70 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g838 . . . . . . . . Cmo04g01700 Cmo18g01209 . Cma18g01188 . Car18g01095 Sed08g1715 Cpe09g00142 Cpe01g01434 Bhi07g01632 Tan04g1133 Cmetu02g1744 Lac13g0267 Hepe10g1704 . . Cla05g02485 Cam05g2669 Cec05g2703 Cco05g2738 Clacu05g2671 Cmu05g2525 Cre05g2640 . Cone19ag0977 Cone8ag0624 . Lsi04g00482 Csa05g02401 Chy10g00963 Cme10g00463 . . . . . . . . . . . Cma04g01622 . Car04g01663 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011447 0 1 0 0 0 1 2 1 1 1 1 1 2 1 1 3 1 2 2 1 1 1 1 1 1 1 1 1 1 0 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo04g01700 Cmo_Chr04 FPKM 19.834492 22.787169 41.19532 41.151081 42.129456 42.734962 38.563534 1.862175 1.719073 2.311796