Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g01710 ATGGAGGTAATCGCTGAAGATGGGAAAGTTGAGTCTCGGGAAGTGAGGGAATCGAAGGGGAAGAAGAAGAAGCAGAAGAACAACAAGGAACAGATTGAAAACTTGGAAGAGGAGACTGGTTGTTGGATTGCTTTGAGGATTTTTGGTAGCTGCATTTCTTCGAGATCCAAAGTTGATAGTTCGATTAGTGGGACTAGTATCAACTATGCTGAAAGCAAGTCTACGGCTGATTCAAGTAGAGACCAACCAACACCTCGAGAGATATCTTCAACAGCCACAAGTATGAGTAATGCAGAGAGTACTTCATCCACTTCCAAACTAGAAGAGGAACTTAAAATTTCGCCTCATCTACGGAATTTTTCATTTAATGATCTTAAGTTGGCTACAAGGAACTTTAGACCCGAGAGTCTACTTGGTGAGGGTGGTTTTGGTTGTGTTTTCAAGGGTTGGGTTGAAGAAAATGGAACTGCTCCAGTTAAACCTGGTACAGGACTCACTGTTGCTGTTAAAACACTCAACCACGATGGTCTTCAGGGCCATAAAGAATGGATGGCTGAAGTGAACTTTCTTAGTGATCTCAAACATCCGAACTTGGTCAGACTTATCGGTTACTGCAACGAAGATGATCAAAGACTGCTTGTATATGAGTTCATGCCTAGAGGAAGCCTGGAGAATCATCTTTTCCGGAGATCTCTACCTCTTCCGTGGTCTATTAGGATGAAAATTGCTCTAGGTGCTGCCAAGGGCCTTGCTTTTCTTCATGAGGAAGCACAAAGACCTGTGATATATCGTGATTTTAAAACGTCCAACATTCTATTAGATGCCGAATACAATGCCAAGCTTTCTGATTTTGGACTTGCAAAAGATGGACCTGATGGAGATAAAACTCATGTCTCTACTCGTGTGATGGGAACGTATGGCTACGCAGCTCCAGAATACTCTACCTGTGCCTTTTCATTGTTCCTGGCGATTGCTTTTGGTCTGATACGTGCTGCTCCGACAGGACATCTTACATCGAGGAGTGATGTTTACAGTTTTGGAGTGGTTCTTCTCGAAATGTTAACTGGAAGAAGATCCATGGATAAAAACCGTCCTAATGGTGAACATAACCTTGTGGAATGGGCACGGCCATACCTAGGAGAGAAAAAGAGATTCTATCGTTTGATAGACCCTAGGCTTGAAGGGCATTTCTCAATAAAAGGTGCCCAAAAGGCTGCACAATTAGCTGCTCAATGCCTTAGCCGAGATCAAAAGATCAGACCTCTAATGAGTGAAGTTGTAGAAGCCTTGAAGCCCCTCCCAAACCTCAAGGACATGGCAAGTTCATCTTATTATTTTCAGACAATGCAAGCTGACCGCATACGATCAAGCCCAATGGCGAGAAATGGCTACCATGCCGGGGCTGGACCAGTTCCGAAGAACGGGCAGCAACTACGCAGCTATTCAGTTGCCAATGGTTCTCATACTTCTCCATATCATCATCAGCAACCCCATCCATCTCCAAAACCCAATTTGAAGGGAATGATATCTGTCAGACTAGCCCAGGTGAAGGACCAGAACCAATTGGAGCTTACTATAGGATGTAACCTTACTGGGAAATGGATCCTTCAATGGGGAGCGTCCTCAATCGACGACAGTGGCAGCGATTGGGATCAAACTCCTGAAGAAATTACACCCCCGGGCTCAATACCCATCAAAGATTATGCTATTGAGACACCATTGAAGAAATCATCCTCATCTTCTTCGGGAGATTCTGTTCATGAAGTGAAGATTCATCATGTTCTCGACAAAACAATTGCAACTATAAATTTTGTTTTGAAGGATGAAGAAACTGGAGTTCTGTATCAGCACAAAGGGAGAGATTTTAAGGTGCCTCTTTTAGAATACCATGGTGAAGATGAAAATATAGTTGGAACAAAAAAGGATATGGATTTATGGCCAGGGGCTTTGGTTCAGCTATACAACCTCCTTGTCAAAGCAGAATCAAATTCTAAAGATCAAGGAAGCAATGGTGAATCTGGAGATACAAAGGAGAGAAAAAAGTATTTGGAAGGCTTCTATGAAGAGCCGCCTATTGTAAAAGAAGTAGCTGTTGATAATTTGGTCTGTGTTTCGGTTAGAAAGTGTCCAGAAACAACAAAATATCTTTTGTATTTGGAAACTGATCTACCTGGAGATGTTATTGTTCATTGGGGAGCGTGTAGAGATGAGACTAGGAAATGGGAGATTCCAGCAGCTCCTCATCCTCCGGAAACAACAGTGTTCAAGAACAAGGCCTTGCGTACCCTACTGCAGCCGAAAGAAGGGGGGAAGGGAAGTTGTGGAACTTTTACCATAGAAGAAGATTTTGGAGGATTTCATTTTGTTCTCAAGCAGAATGAGAACTCTTTGTTAAACTATAAGGGAGATGACTTCTATGTCCCCTTCTCAAGTTCTGGTAACCTGCCTGATCACCCGAGACGGAGCGAATCAGAGGATGCAGAAGTATCTAGAAAACCTGAAGAAGAATCTGAAGGAGTTTCTGTTACTGACATTTCTTCTCAGAAGACTCAAAAGAAAAAAACCAAAGAAGCACAAGAAAGCATTCTTGAGGAAATTGAAAAATTGTCTGCTGAAGCCTATGATCTCTTCAGAAGTTCTTCTTCAACAGAGGAAATAATTGAGACGCCTAAACCCGTAGAACCACCTGTTCGAACATCCTCTGGCACAGGTACAGGTTTTGAAATATTGTGCCAAGGGTTCAATTGGGAATCTCACAAATCTGGAAGATGGTACATGATACTTAAAGAGAAAGCTGCAGAATTATCCTCCCTTGGTTTCACTATGCTATGGTTGCCACCTCCAACAGAATCTGTGTCACCAGAAGGGTATATGCCGAAGGACTTGTATAATTTAAATTCCAGATATGGTAACATTGATGAGCTGAAGGATGCTGTGAAGACGTTCCATGATGTTGGGATAAAGGGTAGGGGCAACAAAAGTAGCGGAGATAACTTTCATGCTGCGCCTAACATTGATCATTCACAAGATTTTGTGAGAAATGATATTAAAGAATGGTTATGCTGGTTAAGAAAGGAAATTGGGTACGATGGGTGGAGGCTTGATTTTGTCAGAGGATTCTGGGGTGGTTATGTGAAGGATTACTTGGATGCAAGTGAACCTTACTTTACTGTTGGCGAATACTGGGATTCGCTGAGCTATACGTATGGTGTGATGGATTATAATCAAGATGCTCATAGACAGAGAATCATTGACTGGATAAATGCTACTAATGGAACTGCTGCAGCATTTGATGTTACTACCAAAGGGATCCTTCATTCTGCGAAGACTCTGAAGTGA 3339 42.41 MEVIAEDGKVESREVRESKGKKKKQKNNKEQIENLEEETGCWIALRIFGSCISSRSKVDSSISGTSINYAESKSTADSSRDQPTPREISSTATSMSNAESTSSTSKLEEELKISPHLRNFSFNDLKLATRNFRPESLLGEGGFGCVFKGWVEENGTAPVKPGTGLTVAVKTLNHDGLQGHKEWMAEVNFLSDLKHPNLVRLIGYCNEDDQRLLVYEFMPRGSLENHLFRRSLPLPWSIRMKIALGAAKGLAFLHEEAQRPVIYRDFKTSNILLDAEYNAKLSDFGLAKDGPDGDKTHVSTRVMGTYGYAAPEYSTCAFSLFLAIAFGLIRAAPTGHLTSRSDVYSFGVVLLEMLTGRRSMDKNRPNGEHNLVEWARPYLGEKKRFYRLIDPRLEGHFSIKGAQKAAQLAAQCLSRDQKIRPLMSEVVEALKPLPNLKDMASSSYYFQTMQADRIRSSPMARNGYHAGAGPVPKNGQQLRSYSVANGSHTSPYHHQQPHPSPKPNLKGMISVRLAQVKDQNQLELTIGCNLTGKWILQWGASSIDDSGSDWDQTPEEITPPGSIPIKDYAIETPLKKSSSSSSGDSVHEVKIHHVLDKTIATINFVLKDEETGVLYQHKGRDFKVPLLEYHGEDENIVGTKKDMDLWPGALVQLYNLLVKAESNSKDQGSNGESGDTKERKKYLEGFYEEPPIVKEVAVDNLVCVSVRKCPETTKYLLYLETDLPGDVIVHWGACRDETRKWEIPAAPHPPETTVFKNKALRTLLQPKEGGKGSCGTFTIEEDFGGFHFVLKQNENSLLNYKGDDFYVPFSSSGNLPDHPRRSESEDAEVSRKPEEESEGVSVTDISSQKTQKKKTKEAQESILEEIEKLSAEAYDLFRSSSSTEEIIETPKPVEPPVRTSSGTGTGFEILCQGFNWESHKSGRWYMILKEKAAELSSLGFTMLWLPPPTESVSPEGYMPKDLYNLNSRYGNIDELKDAVKTFHDVGIKGRGNKSSGDNFHAAPNIDHSQDFVRNDIKEWLCWLRKEIGYDGWRLDFVRGFWGGYVKDYLDASEPYFTVGEYWDSLSYTYGVMDYNQDAHRQRIIDWINATNGTAAAFDVTTKGILHSAKTLK 1112
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8664886 8674178 + CmoCh04G017100.1 Cmo04g01710 380685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g01710 1112 ProSitePatterns Serine/Threonine protein kinases active-site signature. 261 273 IPR008271 GO:0004672|GO:0006468
Cmo04g01710 1112 Gene3D Phosphorylase Kinase; domain 1 90 217 - -
Cmo04g01710 1112 SUPERFAMILY Protein kinase-like (PK-like) 108 430 IPR011009 -
Cmo04g01710 1112 MobiDBLite consensus disorder prediction 818 839 - -
Cmo04g01710 1112 PANTHER KINASE APK1B, CHLOROPLAST, PUTATIVE-RELATED 67 497 - -
Cmo04g01710 1112 Pfam Protein kinase domain 135 428 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo04g01710 1112 ProSitePatterns Protein kinases ATP-binding region signature. 138 170 IPR017441 GO:0005524
Cmo04g01710 1112 SMART aamy 908 1112 IPR006047 GO:0005975
Cmo04g01710 1112 Gene3D Glycosidases 989 1112 - -
Cmo04g01710 1112 Gene3D Glycosidases 908 988 - -
Cmo04g01710 1112 MobiDBLite consensus disorder prediction 545 565 - -
Cmo04g01710 1112 MobiDBLite consensus disorder prediction 811 856 - -
Cmo04g01710 1112 Gene3D Transferase(Phosphotransferase) domain 1 218 451 - -
Cmo04g01710 1112 MobiDBLite consensus disorder prediction 1 18 - -
Cmo04g01710 1112 PANTHER OS01G0588500 PROTEIN-RELATED 67 497 - -
Cmo04g01710 1112 MobiDBLite consensus disorder prediction 1 31 - -
Cmo04g01710 1112 CDD AmyAc_arch_bac_plant_AmyA 909 1108 - -
Cmo04g01710 1112 Coils Coil 15 38 - -
Cmo04g01710 1112 ProSiteProfiles Protein kinase domain profile. 132 436 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo04g01710 1112 Pfam Alpha amylase, catalytic domain 935 988 IPR006047 GO:0005975
Cmo04g01710 1112 Coils Coil 852 872 - -
Cmo04g01710 1112 SUPERFAMILY (Trans)glycosidases 908 1109 IPR017853 -
Cmo04g01710 1112 MobiDBLite consensus disorder prediction 70 104 - -
Cmo04g01710 1112 MobiDBLite consensus disorder prediction 70 109 - -
Cmo04g01710 1112 SMART serkin_6 132 433 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo04g01710 1112 MobiDBLite consensus disorder prediction 483 504 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo04g01710 Cmo04g02882 CCT
Cmo04g01710 Cmo18g01199 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01710 Cmo-Chr4:8664886 Cmo18g01199 Cmo-Chr18:11991198 0 dispersed
Cmo02g01222 Cmo-Chr2:7352509 Cmo04g01710 Cmo-Chr4:8664886 2.31E-117 transposed
Cmo01g00486 Cmo-Chr1:2318743 Cmo04g01710 Cmo-Chr4:8664886 1.71E-86 wgd
Cmo15g00299 Cmo-Chr15:1402587 Cmo04g01710 Cmo-Chr4:8664886 0 wgd
Cmo18g01197 Cmo-Chr18:11979638 Cmo04g01710 Cmo-Chr4:8664886 0 wgd
Cmo04g01710 Cmo-Chr4:8664886 Cmo04g02882 Cmo-Chr4:20514478 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74283 PF00069 Pkinase 1.30E-40 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g01710 - K01176 csv:101202976 999.579