Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g01712 ATGGTAGCACCCACGAGCAGAGCTATGCTTGGGGTTCTGCTAACATTATCCTTGGTGGCTACTGCATATGCTGACACTGGAAACTTCGATGATTACTGGAAATCACGCGCCGCCAAGGCTGAGAAAGCCGCCGCCAAGGCCTTCGACCCTAATCCAGAGAACGTCACCGACATCCTCAATGCTGAAGTTGAGCAGGAATTGAGCGGAAGCAATGATACGAGAAGGAATTTGAAGAGATATACAGGGCCATGTCGAGCCACTAATCCCATAGACCGGTGCTGGAGATGCGACCCCAATTGGGCCAAAAACAGGAAGAAGCTGGCCGATTGTGTTCTGGGTTTTGGCTGGAAGACCATCGGCGGGAAGTTGGGTCCATTCTACGTGGTGAACGATTCGTCGGACTCGGATATCATGGAACCAAAACCTGGGACCCTCCGACATGCTGTGATCCAAAAGGGGCCGTTGTGGATCACATTCTCAACCAACATGGCCATTAGGCTAACTCAGGAGCTCATCGTGTCCAGCGACAAGACCATAGATGCAAGAGGCGCTAATGTTCAGATTGCTTATGGGGCTGGCATTACTCTTCAGTATGTACAAAATGTGATCATCCATGGGCTTCGTATCCATCACATCGTCATGGGTAGCGGCGGAATGATCAGGGACTCCGTGGACCATGTGGGTTTGAGGACAATGAGCGACGGCGATGGCATTTCAATTTTCGGTTCCTCCAACATTTGGATTGACCATGTTTCCATGTCCAATTGTCAAGATGGTCTAATTGATGCCATCATGGGATCCACTGCCATCACCATATCCAATAGCCATTTCACTCACCACAATGATGTGATGCTGTTCGGAGCAAGCGATGGGTACTCGAATGATCAGATAATGCAAGTGACAGTGGCATTCAATCACTTTGGTCAAGGGTTGGTGCAGAGGATGCCAAGGTGCCGATGGGGGTTCTTCCATGTCGTTAACAATGACTACACTCATTGGCTTATGTATGCCATAGGTGGTAGCCAGCATCCCATCATTATCAGCCAGGGCAATCGATTCATTGCTCCTCCAAATGTAAATGCTAAAGAGGTGACAAAGAGAGAGTACTCGCCGGAGAGTGTGTGGAAGACGTGGACATGGAGATCAGAGGGAGACTTGATGATGAACGGAGCATTCTTTGTTACCTCCGGCGACCAAAGGAAGAAACGACCTTTCTCAAAGATGGATATGATCTCGTACAGAGAAGGGACATACGTTACCAGAATGACACGTATGTCAGAATCTGGAGTTGAATTGAATTTCTCAATACTGTAG 1314 48.71 MVAPTSRAMLGVLLTLSLVATAYADTGNFDDYWKSRAAKAEKAAAKAFDPNPENVTDILNAEVEQELSGSNDTRRNLKRYTGPCRATNPIDRCWRCDPNWAKNRKKLADCVLGFGWKTIGGKLGPFYVVNDSSDSDIMEPKPGTLRHAVIQKGPLWITFSTNMAIRLTQELIVSSDKTIDARGANVQIAYGAGITLQYVQNVIIHGLRIHHIVMGSGGMIRDSVDHVGLRTMSDGDGISIFGSSNIWIDHVSMSNCQDGLIDAIMGSTAITISNSHFTHHNDVMLFGASDGYSNDQIMQVTVAFNHFGQGLVQRMPRCRWGFFHVVNNDYTHWLMYAIGGSQHPIIISQGNRFIAPPNVNAKEVTKREYSPESVWKTWTWRSEGDLMMNGAFFVTSGDQRKKRPFSKMDMISYREGTYVTRMTRMSESGVELNFSIL 437
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8678089 8680294 + CmoCh04G017120.1 Cmo04g01712 380687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g01712 437 SUPERFAMILY Pectin lyase-like 76 414 IPR011050 -
Cmo04g01712 437 Pfam Pectate lyase 172 353 IPR002022 -
Cmo04g01712 437 Gene3D - 87 429 IPR012334 -
Cmo04g01712 437 PANTHER PECTATE LYASE 12 428 - -
Cmo04g01712 437 Pfam Pectate lyase, N terminus 27 77 IPR007524 GO:0030570
Cmo04g01712 437 PANTHER PECTATE LYASE 18-RELATED 12 428 IPR045032 GO:0030570
Cmo04g01712 437 SMART amb_all 162 359 IPR002022 -
Cmo04g01712 437 PRINTS Pollen allergen Amb family signature 336 355 IPR018082 -
Cmo04g01712 437 PRINTS Pollen allergen Amb family signature 378 402 IPR018082 -
Cmo04g01712 437 PRINTS Pollen allergen Amb family signature 234 255 IPR018082 -
Cmo04g01712 437 PRINTS Pollen allergen Amb family signature 134 159 IPR018082 -
Cmo04g01712 437 PRINTS Pollen allergen Amb family signature 110 127 IPR018082 -
Cmo04g01712 437 PRINTS Pollen allergen Amb family signature 170 186 IPR018082 -
Cmo04g01712 437 PRINTS Pollen allergen Amb family signature 314 333 IPR018082 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01712 Cmo-Chr4:8678089 Cmo05g00962 Cmo-Chr5:7722814 0 dispersed
Cmo12g00634 Cmo-Chr12:4004691 Cmo04g01712 Cmo-Chr4:8678089 0 transposed
Cmo11g01064 Cmo-Chr11:5919240 Cmo04g01712 Cmo-Chr4:8678089 0 wgd
Cmo14g00614 Cmo-Chr14:3100858 Cmo04g01712 Cmo-Chr4:8678089 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g01712 K01728 - csv:101206497 744.962