Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo04g01712 | ATGGTAGCACCCACGAGCAGAGCTATGCTTGGGGTTCTGCTAACATTATCCTTGGTGGCTACTGCATATGCTGACACTGGAAACTTCGATGATTACTGGAAATCACGCGCCGCCAAGGCTGAGAAAGCCGCCGCCAAGGCCTTCGACCCTAATCCAGAGAACGTCACCGACATCCTCAATGCTGAAGTTGAGCAGGAATTGAGCGGAAGCAATGATACGAGAAGGAATTTGAAGAGATATACAGGGCCATGTCGAGCCACTAATCCCATAGACCGGTGCTGGAGATGCGACCCCAATTGGGCCAAAAACAGGAAGAAGCTGGCCGATTGTGTTCTGGGTTTTGGCTGGAAGACCATCGGCGGGAAGTTGGGTCCATTCTACGTGGTGAACGATTCGTCGGACTCGGATATCATGGAACCAAAACCTGGGACCCTCCGACATGCTGTGATCCAAAAGGGGCCGTTGTGGATCACATTCTCAACCAACATGGCCATTAGGCTAACTCAGGAGCTCATCGTGTCCAGCGACAAGACCATAGATGCAAGAGGCGCTAATGTTCAGATTGCTTATGGGGCTGGCATTACTCTTCAGTATGTACAAAATGTGATCATCCATGGGCTTCGTATCCATCACATCGTCATGGGTAGCGGCGGAATGATCAGGGACTCCGTGGACCATGTGGGTTTGAGGACAATGAGCGACGGCGATGGCATTTCAATTTTCGGTTCCTCCAACATTTGGATTGACCATGTTTCCATGTCCAATTGTCAAGATGGTCTAATTGATGCCATCATGGGATCCACTGCCATCACCATATCCAATAGCCATTTCACTCACCACAATGATGTGATGCTGTTCGGAGCAAGCGATGGGTACTCGAATGATCAGATAATGCAAGTGACAGTGGCATTCAATCACTTTGGTCAAGGGTTGGTGCAGAGGATGCCAAGGTGCCGATGGGGGTTCTTCCATGTCGTTAACAATGACTACACTCATTGGCTTATGTATGCCATAGGTGGTAGCCAGCATCCCATCATTATCAGCCAGGGCAATCGATTCATTGCTCCTCCAAATGTAAATGCTAAAGAGGTGACAAAGAGAGAGTACTCGCCGGAGAGTGTGTGGAAGACGTGGACATGGAGATCAGAGGGAGACTTGATGATGAACGGAGCATTCTTTGTTACCTCCGGCGACCAAAGGAAGAAACGACCTTTCTCAAAGATGGATATGATCTCGTACAGAGAAGGGACATACGTTACCAGAATGACACGTATGTCAGAATCTGGAGTTGAATTGAATTTCTCAATACTGTAG | 1314 | 48.71 | MVAPTSRAMLGVLLTLSLVATAYADTGNFDDYWKSRAAKAEKAAAKAFDPNPENVTDILNAEVEQELSGSNDTRRNLKRYTGPCRATNPIDRCWRCDPNWAKNRKKLADCVLGFGWKTIGGKLGPFYVVNDSSDSDIMEPKPGTLRHAVIQKGPLWITFSTNMAIRLTQELIVSSDKTIDARGANVQIAYGAGITLQYVQNVIIHGLRIHHIVMGSGGMIRDSVDHVGLRTMSDGDGISIFGSSNIWIDHVSMSNCQDGLIDAIMGSTAITISNSHFTHHNDVMLFGASDGYSNDQIMQVTVAFNHFGQGLVQRMPRCRWGFFHVVNNDYTHWLMYAIGGSQHPIIISQGNRFIAPPNVNAKEVTKREYSPESVWKTWTWRSEGDLMMNGAFFVTSGDQRKKRPFSKMDMISYREGTYVTRMTRMSESGVELNFSIL | 437 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 8678089 | 8680294 | + | CmoCh04G017120.1 | Cmo04g01712 | 380687 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo04g01712 | 437 | SUPERFAMILY | Pectin lyase-like | 76 | 414 | IPR011050 | - | |
Cmo04g01712 | 437 | Pfam | Pectate lyase | 172 | 353 | IPR002022 | - | |
Cmo04g01712 | 437 | Gene3D | - | 87 | 429 | IPR012334 | - | |
Cmo04g01712 | 437 | PANTHER | PECTATE LYASE | 12 | 428 | - | - | |
Cmo04g01712 | 437 | Pfam | Pectate lyase, N terminus | 27 | 77 | IPR007524 | GO:0030570 | |
Cmo04g01712 | 437 | PANTHER | PECTATE LYASE 18-RELATED | 12 | 428 | IPR045032 | GO:0030570 | |
Cmo04g01712 | 437 | SMART | amb_all | 162 | 359 | IPR002022 | - | |
Cmo04g01712 | 437 | PRINTS | Pollen allergen Amb family signature | 336 | 355 | IPR018082 | - | |
Cmo04g01712 | 437 | PRINTS | Pollen allergen Amb family signature | 378 | 402 | IPR018082 | - | |
Cmo04g01712 | 437 | PRINTS | Pollen allergen Amb family signature | 234 | 255 | IPR018082 | - | |
Cmo04g01712 | 437 | PRINTS | Pollen allergen Amb family signature | 134 | 159 | IPR018082 | - | |
Cmo04g01712 | 437 | PRINTS | Pollen allergen Amb family signature | 110 | 127 | IPR018082 | - | |
Cmo04g01712 | 437 | PRINTS | Pollen allergen Amb family signature | 170 | 186 | IPR018082 | - | |
Cmo04g01712 | 437 | PRINTS | Pollen allergen Amb family signature | 314 | 333 | IPR018082 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo04g01712 | Cmo-Chr4:8678089 | Cmo05g00962 | Cmo-Chr5:7722814 | 0 | dispersed | |
Cmo12g00634 | Cmo-Chr12:4004691 | Cmo04g01712 | Cmo-Chr4:8678089 | 0 | transposed | |
Cmo11g01064 | Cmo-Chr11:5919240 | Cmo04g01712 | Cmo-Chr4:8678089 | 0 | wgd | |
Cmo14g00614 | Cmo-Chr14:3100858 | Cmo04g01712 | Cmo-Chr4:8678089 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo04g01712 | K01728 | - | csv:101206497 | 744.962 |