Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g01714 ATGGCACAAGAACAGGAGGTTAGATATTCTGCATTGTCAAACTGCGAATCCTATTTCGAACGCATCCAATCTACGAAGAAACTTCCAAAGTTCTTACAGGAGACGCTGAATGATGCATTTGCCAGGATCCCAGTTTCCTCATTTCCTGGAGTTTCGGTAGGCAGAGTTATTGAGATTCCAGCAGACACAACTATTCCTCATGCTGTGAAGATTCTATCTGAGTGCAACATTTTATCAGCTCCTGTAACAAATCCAAATGCAAGAGCAAGTATAAATTGGAGAGAAAGGTACCTTGGAATTGTGGATTATTCGGCGATTATCTTGTGGGTGATGGAGAGTGCGGAACTTGCTGCAGCTTCTTTATCTGCTGGTTCAGCTACTGCTATTGGAGTTGGTGCAGGAGCAGTTGGTGCTCTTGGAGCATTGGCATTAGGCGCGACAGGCCCCATTGCAGTTGCAGGGATAGCTGCAGCGGCGGTTGGAGCTGCTGTGGCTGGTGGAGTTGCTGTTGACAGAGGAATCGGTAAAGATGCTGCCACAGCGGCTGATAGTTTAGGACAAGATTTTTACAAAGTCTTACTGCAAGAAGAACCATTCAAATCAACAACAGTTCAGTCGATATTGAAATCCTACCGCTGGGCTCCATTTCTTCCAGTGACCCTAGATAATTCCATGTTAGGTGTCTTATTGCTACTCTCAAAATATAGATTGAGGAATGTACCTGTCATCGAACCAGGGAAACCCGACATCAAGAATTACATAACTCAATCTGCAGTGGTTCAGGGTCTTGAAAGGTGTAGAGGAAGGGACTGGTTTGACTGTATAGCTGCAAGACCTATTTCCGATTTAGGACTTCCTTTCATGTCTTGTAACGAGGCAAGTACTTATAATGACTGGTTTTGGTTTGTCATTACCATCCAAAGCCAAGAGTTGATACTGGAAGCTTTCAAGCGAATGAGAGATAATCACATTGGTGGGCTTCCAGTTGTCGAGGGGCCAAAGAACAGAATTGTGGGAAATATAAGTATAAGAGACATAAGATATTTACTGCTTAAGCCTGAAATTTTCTCCAATTTCAGGAAGCTTACTGTTATGGATTTCATCAAGACAGTAGTTATGTTGATCCAAGATGTTGGGAAACTAGCCCCGCCAATCATATGCAAACTCGATTCGACTCTCGGCTCTGTTATTCATAGTCTTGCTTCCAAGTCAGTCCACAGGATCTATGTCGTAGCTGCTGATGACGAAGTTGTAGGGGTCATCACCCTAAGGGACGTGATCTCGTGCTTCATTTTTGAACCACCCAACTACATAATCAACAACTTTGGATTCTCTGCCGAAGAAATGTTGAATCAGTGA 1359 43.64 MAQEQEVRYSALSNCESYFERIQSTKKLPKFLQETLNDAFARIPVSSFPGVSVGRVIEIPADTTIPHAVKILSECNILSAPVTNPNARASINWRERYLGIVDYSAIILWVMESAELAAASLSAGSATAIGVGAGAVGALGALALGATGPIAVAGIAAAAVGAAVAGGVAVDRGIGKDAATAADSLGQDFYKVLLQEEPFKSTTVQSILKSYRWAPFLPVTLDNSMLGVLLLLSKYRLRNVPVIEPGKPDIKNYITQSAVVQGLERCRGRDWFDCIAARPISDLGLPFMSCNEASTYNDWFWFVITIQSQELILEAFKRMRDNHIGGLPVVEGPKNRIVGNISIRDIRYLLLKPEIFSNFRKLTVMDFIKTVVMLIQDVGKLAPPIICKLDSTLGSVIHSLASKSVHRIYVVAADDEVVGVITLRDVISCFIFEPPNYIINNFGFSAEEMLNQ 452
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8686405 8688772 + CmoCh04G017140.1 Cmo04g01714 380689

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g01714 452 Pfam CBS domain 303 351 IPR000644 -
Cmo04g01714 452 Pfam CBS domain 383 428 IPR000644 -
Cmo04g01714 452 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 7 451 - -
Cmo04g01714 452 CDD CBS_pair_SF 303 427 - -
Cmo04g01714 452 SUPERFAMILY CBS-domain pair 303 436 IPR046342 -
Cmo04g01714 452 ProSiteProfiles CBS domain profile. 296 357 IPR000644 -
Cmo04g01714 452 PANTHER BNAANNG38820D PROTEIN 7 451 - -
Cmo04g01714 452 SUPERFAMILY CBS-domain pair 36 261 IPR046342 -
Cmo04g01714 452 ProSiteProfiles CBS domain profile. 378 438 IPR000644 -
Cmo04g01714 452 SMART cbs_1 302 351 IPR000644 -
Cmo04g01714 452 SMART cbs_1 383 431 IPR000644 -
Cmo04g01714 452 SMART cbs_1 215 264 IPR000644 -
Cmo04g01714 452 SMART cbs_1 55 111 IPR000644 -
Cmo04g01714 452 Gene3D - 299 433 IPR046342 -
Cmo04g01714 452 Gene3D - 51 267 IPR046342 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g01714 - - - csv:101202737 702.975
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo04g01714 Cmo18g01195 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01714 Cmo-Chr4:8686405 Cmo11g00038 Cmo-Chr11:159719 1.46E-77 dispersed
Cmo18g01195 Cmo-Chr18:11970852 Cmo04g01714 Cmo-Chr4:8686405 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g862 . . . . . . Bma14g01634 . Cmo04g01714 Cmo18g01195 . Cma18g01170 . Car18g01079 Sed08g0035 Cpe09g00157 Cpe01g01449 Bhi07g01598 Tan04g1112 Cmetu10g1744 Lac13g0290 . . . Cla05g02467 Cam05g2652 Cec05g2687 Cco05g2721 Clacu05g2656 Cmu05g2508 Cre05g2624 . Cone19ag0967 . . Lsi04g00452 Csa05g02423 Chy10g00979 Cme10g00442 . . Bda07g01459 . Bpe11g01631 . . . . . . Cma04g01636 . Car04g01677 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009000 1 3 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 0 1 1 1 1 0 1 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo04g01714 Cmo_Chr04 FPKM 54.657764 57.955574 36.371685 35.602974 6.945389 5.994313 5.957665 77.872581 72.248779 77.833115