Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g01722 ATGACAAGCAATGGGATGGCGTTTTTTCCAGCAAATTTCATGCTACAAACTTCCCATGAAGATCATGATCATCATCACCACTCTTCTCCTCCATCTCTCAACCCAATTCTTCCTTCTTGCACATCCCAAGATTTTCATGGAGTTGCATCATTTCTAGGAAAACGATCCATGTCGTTTTCAGGGGCGGAAATGGTGGAAGAAGGAAATAACGGTGAGGATGAATTTTCTGATGATGGGTCACAGGCAGGTGAGAAAAAGAGGAGACTCAACATGGAGCAAGTGAAAACACTAGAGAAAAATTTCGAACTGGGAAATAAGCTTGAGCCTGAGAGAAAAATGCAGCTGGCTAGAGCCCTTGGTCTACAGCCAAGACAGATTGCTATTTGGTTTCAAAACAGGAGGGCTCGGTGGAAGACTAAGCAGCTAGAGAAAGACTACGATCTTCTCAAGAGACAATTTGAAGCTATCAAATCAGATAACGAAGCCCTCAAATCCCAGAACCAAAAGCTTCAAGCAGAGATAATGGGACTAAAAAGTAGAGAGCCAACAGAATCAATCAACCTGAACAAAGAAACAGAGGGGTCTTGCAGTAACAGAAGTGAAAACAGCTCTGATAATATTAAATTGGACATCTCAAGAACACCTGCCATCGACAGCCCTCATCAGCATCAGCATCAGCACCCAACAAACAGGCCTCTTTTTCCCACGTCTTCCTTGAGGCCTCCAGCTTTGGCTCAGCTCTTTCAAACCTCCTCAAGATCATCAGACCCACCAAAGCAACTTGATAACAACAACCACCACCACCATCATCAAATGCCCAAAGAAGAGAACACCAGCTTGTCCAATATGTTCTGTGGAATGGATGATCACTCTGGCTTCTGGCCTTGGTTGGAGCAGCAACATTTCAACTGA 912 44.19 MTSNGMAFFPANFMLQTSHEDHDHHHHSSPPSLNPILPSCTSQDFHGVASFLGKRSMSFSGAEMVEEGNNGEDEFSDDGSQAGEKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDLLKRQFEAIKSDNEALKSQNQKLQAEIMGLKSREPTESINLNKETEGSCSNRSENSSDNIKLDISRTPAIDSPHQHQHQHPTNRPLFPTSSLRPPALAQLFQTSSRSSDPPKQLDNNNHHHHHQMPKEENTSLSNMFCGMDDHSGFWPWLEQQHFN 303
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8724214 8726346 - CmoCh04G017220.1 Cmo04g01722 380697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g01722 303 ProSitePatterns 'Homeobox' domain signature. 115 138 IPR017970 GO:0000981|GO:0006355
Cmo04g01722 303 PRINTS Lambda-repressor HTH signature 120 136 IPR000047 GO:0003677
Cmo04g01722 303 PRINTS Lambda-repressor HTH signature 111 120 IPR000047 GO:0003677
Cmo04g01722 303 MobiDBLite consensus disorder prediction 176 281 - -
Cmo04g01722 303 Coils Coil 132 180 - -
Cmo04g01722 303 MobiDBLite consensus disorder prediction 260 275 - -
Cmo04g01722 303 SMART HOX_1 83 144 IPR001356 GO:0003677
Cmo04g01722 303 MobiDBLite consensus disorder prediction 188 210 - -
Cmo04g01722 303 SUPERFAMILY Homeodomain-like 74 142 IPR009057 -
Cmo04g01722 303 MobiDBLite consensus disorder prediction 217 259 - -
Cmo04g01722 303 ProSiteProfiles 'Homeobox' domain profile. 80 140 IPR001356 GO:0003677
Cmo04g01722 303 MobiDBLite consensus disorder prediction 65 85 - -
Cmo04g01722 303 Pfam Homeobox associated leucine zipper 140 180 IPR003106 GO:0006355|GO:0043565
Cmo04g01722 303 Pfam Homeodomain 85 138 IPR001356 GO:0003677
Cmo04g01722 303 CDD homeodomain 85 141 IPR001356 GO:0003677
Cmo04g01722 303 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-13 4 303 - -
Cmo04g01722 303 Gene3D - 77 146 - -
Cmo04g01722 303 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 4 303 IPR045224 GO:0003700
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo04g01722 Cmo04g02884 CCT
Cmo04g01722 Cmo04g02884 ECH
Cmo04g02884 Cmo04g01722 ECH
Cmo04g01722 Cmo18g01188 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01722 Cmo-Chr4:8724214 Cmo04g00899 Cmo-Chr4:4526610 4.09E-38 dispersed
Cmo15g00296 Cmo-Chr15:1395440 Cmo04g01722 Cmo-Chr4:8724214 6.09E-69 wgd
Cmo18g01188 Cmo-Chr18:11928384 Cmo04g01722 Cmo-Chr4:8724214 0 wgd
Cmo04g01722 Cmo-Chr4:8724214 Cmo04g02884 Cmo-Chr4:20528681 1.37E-78 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9650 PF00046 Homeodomain 3.00E-15 CL0123 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g01722 K09338 - csv:101221595 533.487