Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo04g01722 | ATGACAAGCAATGGGATGGCGTTTTTTCCAGCAAATTTCATGCTACAAACTTCCCATGAAGATCATGATCATCATCACCACTCTTCTCCTCCATCTCTCAACCCAATTCTTCCTTCTTGCACATCCCAAGATTTTCATGGAGTTGCATCATTTCTAGGAAAACGATCCATGTCGTTTTCAGGGGCGGAAATGGTGGAAGAAGGAAATAACGGTGAGGATGAATTTTCTGATGATGGGTCACAGGCAGGTGAGAAAAAGAGGAGACTCAACATGGAGCAAGTGAAAACACTAGAGAAAAATTTCGAACTGGGAAATAAGCTTGAGCCTGAGAGAAAAATGCAGCTGGCTAGAGCCCTTGGTCTACAGCCAAGACAGATTGCTATTTGGTTTCAAAACAGGAGGGCTCGGTGGAAGACTAAGCAGCTAGAGAAAGACTACGATCTTCTCAAGAGACAATTTGAAGCTATCAAATCAGATAACGAAGCCCTCAAATCCCAGAACCAAAAGCTTCAAGCAGAGATAATGGGACTAAAAAGTAGAGAGCCAACAGAATCAATCAACCTGAACAAAGAAACAGAGGGGTCTTGCAGTAACAGAAGTGAAAACAGCTCTGATAATATTAAATTGGACATCTCAAGAACACCTGCCATCGACAGCCCTCATCAGCATCAGCATCAGCACCCAACAAACAGGCCTCTTTTTCCCACGTCTTCCTTGAGGCCTCCAGCTTTGGCTCAGCTCTTTCAAACCTCCTCAAGATCATCAGACCCACCAAAGCAACTTGATAACAACAACCACCACCACCATCATCAAATGCCCAAAGAAGAGAACACCAGCTTGTCCAATATGTTCTGTGGAATGGATGATCACTCTGGCTTCTGGCCTTGGTTGGAGCAGCAACATTTCAACTGA | 912 | 44.19 | MTSNGMAFFPANFMLQTSHEDHDHHHHSSPPSLNPILPSCTSQDFHGVASFLGKRSMSFSGAEMVEEGNNGEDEFSDDGSQAGEKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDLLKRQFEAIKSDNEALKSQNQKLQAEIMGLKSREPTESINLNKETEGSCSNRSENSSDNIKLDISRTPAIDSPHQHQHQHPTNRPLFPTSSLRPPALAQLFQTSSRSSDPPKQLDNNNHHHHHQMPKEENTSLSNMFCGMDDHSGFWPWLEQQHFN | 303 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 8724214 | 8726346 | - | CmoCh04G017220.1 | Cmo04g01722 | 380697 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo04g01722 | 303 | ProSitePatterns | 'Homeobox' domain signature. | 115 | 138 | IPR017970 | GO:0000981|GO:0006355 | |
Cmo04g01722 | 303 | PRINTS | Lambda-repressor HTH signature | 120 | 136 | IPR000047 | GO:0003677 | |
Cmo04g01722 | 303 | PRINTS | Lambda-repressor HTH signature | 111 | 120 | IPR000047 | GO:0003677 | |
Cmo04g01722 | 303 | MobiDBLite | consensus disorder prediction | 176 | 281 | - | - | |
Cmo04g01722 | 303 | Coils | Coil | 132 | 180 | - | - | |
Cmo04g01722 | 303 | MobiDBLite | consensus disorder prediction | 260 | 275 | - | - | |
Cmo04g01722 | 303 | SMART | HOX_1 | 83 | 144 | IPR001356 | GO:0003677 | |
Cmo04g01722 | 303 | MobiDBLite | consensus disorder prediction | 188 | 210 | - | - | |
Cmo04g01722 | 303 | SUPERFAMILY | Homeodomain-like | 74 | 142 | IPR009057 | - | |
Cmo04g01722 | 303 | MobiDBLite | consensus disorder prediction | 217 | 259 | - | - | |
Cmo04g01722 | 303 | ProSiteProfiles | 'Homeobox' domain profile. | 80 | 140 | IPR001356 | GO:0003677 | |
Cmo04g01722 | 303 | MobiDBLite | consensus disorder prediction | 65 | 85 | - | - | |
Cmo04g01722 | 303 | Pfam | Homeobox associated leucine zipper | 140 | 180 | IPR003106 | GO:0006355|GO:0043565 | |
Cmo04g01722 | 303 | Pfam | Homeodomain | 85 | 138 | IPR001356 | GO:0003677 | |
Cmo04g01722 | 303 | CDD | homeodomain | 85 | 141 | IPR001356 | GO:0003677 | |
Cmo04g01722 | 303 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-13 | 4 | 303 | - | - | |
Cmo04g01722 | 303 | Gene3D | - | 77 | 146 | - | - | |
Cmo04g01722 | 303 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN | 4 | 303 | IPR045224 | GO:0003700 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo04g01722 | Cmo04g02884 | CCT | |
Cmo04g01722 | Cmo04g02884 | ECH | |
Cmo04g02884 | Cmo04g01722 | ECH | |
Cmo04g01722 | Cmo18g01188 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo04g01722 | Cmo-Chr4:8724214 | Cmo04g00899 | Cmo-Chr4:4526610 | 4.09E-38 | dispersed | |
Cmo15g00296 | Cmo-Chr15:1395440 | Cmo04g01722 | Cmo-Chr4:8724214 | 6.09E-69 | wgd | |
Cmo18g01188 | Cmo-Chr18:11928384 | Cmo04g01722 | Cmo-Chr4:8724214 | 0 | wgd | |
Cmo04g01722 | Cmo-Chr4:8724214 | Cmo04g02884 | Cmo-Chr4:20528681 | 1.37E-78 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
9650 | PF00046 | Homeodomain | 3.00E-15 | CL0123 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo04g01722 | K09338 | - | csv:101221595 | 533.487 |