Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g01723 ATGAGCCCTGGTGGTTATACGGTCGAAGTGACGGGCTTGTCTCCTAAAGCCGAAGAGAAAGATGTCCTCGATTTCTTCGCTTTCTGTGGTCCAATCGAGCTCGTTGAGATTATTAGATCTGGTGAAGATGCCTGCACTGCCTATGTGACATTCAAAGATGCTTATTCTCAAGAGACTGCTTGCTTACTGAGTGGTGCAACAATTGTAGATCAACGAGTGTGCATAACACGGTGGGGACATTTTGATGATGAATTTGGTTTCTGGAGTAGGCCTTCCGGTTACCATGAAGAAGACAGTACTGCTTCGGCACAAAGAAGTCAGTTTATTTCCAGCGCTGGTAACGCAGTGACCATGGCCCAAGAAGTAGTCAAAACCATGCTGTCCATGGGTTACGTGCTGGGCAAAGATGCATTAACCAAAGCCAAAACCTTTGATGAATCTCATCAGGTCTCAGCAACCGCAGCAGCTAAGGTAGCAGATTTGAGTCATAGAATTGGTCTTACTGACATGATAGGTGCGGGTTTTGAAGCAGTTAAAACCATGGATGATAAGTACCACGTATTGCAGACCACCAAATCAGCTATATCAGCCACAGGAAGAACAGCTGCTGCCGCTGCCGATACCGTGGTCCAAAGTGGCTACTTCTCTAGGGGAGCTCTTTTCGTGTCGGATGCCCTGAATCGAGCAGCCAAAGTTGCTGCTGACTTGGGTAGTCGTGGTGTTGAGCACTGA 732 47.54 MSPGGYTVEVTGLSPKAEEKDVLDFFAFCGPIELVEIIRSGEDACTAYVTFKDAYSQETACLLSGATIVDQRVCITRWGHFDDEFGFWSRPSGYHEEDSTASAQRSQFISSAGNAVTMAQEVVKTMLSMGYVLGKDALTKAKTFDESHQVSATAAAKVADLSHRIGLTDMIGAGFEAVKTMDDKYHVLQTTKSAISATGRTAAAAADTVVQSGYFSRGALFVSDALNRAAKVAADLGSRGVEH 243
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8731610 8735339 - CmoCh04G017230.1 Cmo04g01723 380698

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g01723 243 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 10 70 IPR000504 GO:0003723
Cmo04g01723 243 Gene3D - 5 76 IPR012677 -
Cmo04g01723 243 SMART rrm1_1 7 77 IPR000504 GO:0003723
Cmo04g01723 243 SUPERFAMILY RNA-binding domain, RBD 5 78 IPR035979 GO:0003676
Cmo04g01723 243 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 1 242 - -
Cmo04g01723 243 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 72 IPR000504 GO:0003723
Cmo04g01723 243 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 1 242 - -
Cmo04g01723 243 CDD RRM_Vip1_like 8 76 IPR034360 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g01723 - - - csv:101221355 424.861
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo04g01723 Cmo04g02886 CCT
Cmo04g02886 Cmo04g01723 ECH
Cmo04g01723 Cmo04g02886 ECH
Cmo04g01723 Cmo18g01187 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01723 Cmo-Chr4:8731610 Cmo20g00931 Cmo-Chr20:4822403 1.59E-42 dispersed
Cmo18g01187 Cmo-Chr18:11918942 Cmo04g01723 Cmo-Chr4:8731610 5.05E-157 wgd
Cmo04g01723 Cmo-Chr4:8731610 Cmo04g02886 Cmo-Chr4:20540974 1.22E-87 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g881 . . . . . . . . Cmo04g01723 Cmo18g01187 . Cma18g01164 . Car18g01073 Sed06g1544 Cpe09g00165 . Bhi07g01588 Tan04g1099 Cmetu10g1298 Lac13g0302 Hepe10g1726 . . . . . . . . . Cone13ag0968 Cone19ag0958 . . Lsi04g00441 Csa05g02433 Chy10g00986 Cme10g00432 . Blo11g00763 Bda07g01461 . Bpe11g01634 . . . . Cmo04g02886 . Cma04g01644 . Car04g01685 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001744 2 4 2 0 1 2 2 2 2 2 2 2 2 2 2 3 1 4 2 2 2 2 2 2 2 2 2 5 6 2 68
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo04g01723 Cmo_Chr04 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0