Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g01729 ATGATCATGGATGGTGAAAATGGGATCCGGAGACCTAATTTTCCATTACAATTGTTGGAGAAAAAAGAGGAAGAACACCCATGTTCCACCTCCGCAAACAACGGAACAACAACAACCACCACGACGGTGAATCCGAATCTTCAATCTTCTTCACCTAAGAAGCCACCTCCCAAAAGGGCTACCACCAAAGATCGTCACACGAAAGTCGATGGTCGTGGTCGGAGGATTCGGATGCCGGCCCTTTGTGCTGCTAGGGTTTTTCAGCTTACTAGAGAGCTTGGTCATAAGTCCGACGGTGAAACTATAGAGTGGCTGTTGCAACAGGCGGAGCCGGCTGTCATCGCCGCCACGGGTACAGGTACAATTCCGGCTAATTTCACCTCGCTTAATATTTCTCTCCGTAGTTCCGGCTCCACCGTTCTTGCTCCTTCTCACCTCCGGACGAGCTATTTCAGTCCGACACAATTCGCCGTCAGAACAAGATCTGATCTTTGGGATAGGAGTAATAATAATAATAATCATAATCATAATAATAATAATAATACTCTGGTGGATGATTCCTCTACATTTTTTAATTTCAATTCTCCTAATTACATCAACGCATTCAAGCACGATCAGGGTGGGATTGATGTAACCGACGCTGGAAAGAAACGGCGGCCGGAGAATTCGGAATCGTCATCGGAGAATCCGGTGGGGAATTATTTGGTTCAATCGAGTACCGGGTCGATTCCGGCGAGTCACAGCACTCCGGTGCCGGCAACATTTTGGATGGTGACGAATCCGAGCAATCAAGCGAGTGATCCGATGTGGACATTTCCGTCGGTGAGTAACAGCAGCATGTTTAGAGGGGGAAGCGGCGGCGGTGGCGGTGGTGGCGGCGGGGGGTTTCATTTCATGAATCTTCCACCACCAATGGCTCTTTTGCCAACTGGGCAACAAGTGGGGTCAGGGATCGGGGGTGGTAGCGGTTGTCCGGCGACCGACACCCATTTGGGGATGTTGGCGGCTCTGAGTGCTTATAGGACGATACCGGGTGTGTCAATTTCAGAATCTCCGACAAGAGGAGCGGCAGCTGTTCATCGAGGTGGAAATGAGGCTCATGATTCCACTTCTAATCGTGATCAATCATAG 1131 49.69 MIMDGENGIRRPNFPLQLLEKKEEEHPCSTSANNGTTTTTTTVNPNLQSSSPKKPPPKRATTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLRSSGSTVLAPSHLRTSYFSPTQFAVRTRSDLWDRSNNNNNHNHNNNNNTLVDDSSTFFNFNSPNYINAFKHDQGGIDVTDAGKKRRPENSESSSENPVGNYLVQSSTGSIPASHSTPVPATFWMVTNPSNQASDPMWTFPSVSNSSMFRGGSGGGGGGGGGGFHFMNLPPPMALLPTGQQVGSGIGGGSGCPATDTHLGMLAALSAYRTIPGVSISESPTRGAAAVHRGGNEAHDSTSNRDQS 376
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8756861 8757991 - CmoCh04G017290.1 Cmo04g01729 380704

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g01729 376 MobiDBLite consensus disorder prediction 209 224 - -
Cmo04g01729 376 MobiDBLite consensus disorder prediction 22 70 - -
Cmo04g01729 376 Pfam TCP family transcription factor 61 180 IPR017887 -
Cmo04g01729 376 MobiDBLite consensus disorder prediction 225 246 - -
Cmo04g01729 376 MobiDBLite consensus disorder prediction 349 376 - -
Cmo04g01729 376 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 11 356 IPR005333 GO:0003700
Cmo04g01729 376 ProSiteProfiles TCP domain profile. 62 116 IPR017887 -
Cmo04g01729 376 MobiDBLite consensus disorder prediction 204 246 - -
Cmo04g01729 376 MobiDBLite consensus disorder prediction 29 56 - -
Cmo04g01729 376 PANTHER TRANSCRIPTION FACTOR TCP23 11 356 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g01729 - - - cmax:111485089 637.876
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo04g01729 Cmo18g01183 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01729 Cmo-Chr4:8756861 Cmo04g01953 Cmo-Chr4:9996727 3.98E-45 dispersed
Cmo10g00203 Cmo-Chr10:910288 Cmo04g01729 Cmo-Chr4:8756861 1.27E-94 wgd
Cmo11g00159 Cmo-Chr11:799344 Cmo04g01729 Cmo-Chr4:8756861 3.13E-82 wgd
Cmo13g01176 Cmo-Chr13:9377630 Cmo04g01729 Cmo-Chr4:8756861 8.64E-55 wgd
Cmo18g01183 Cmo-Chr18:11881839 Cmo04g01729 Cmo-Chr4:8756861 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g894 . Blo16g01121 . Bda11g01222 Bpe13g01416 . . Bma15g00272 Cmo04g01729 Cmo18g01183 . Cma18g01160 . Car18g01068 Sed06g1538 . Cpe01g01458 Bhi07g01576 Tan04g1091 Cmetu10g1669 Lac13g0309 Hepe10g1732 . . Cla05g02451 Cam05g2637 Cec05g2670 Cco05g2708 Clacu05g2640 Cmu05g2494 Cre05g2607 . Cone19ag0952 . . Lsi04g00434 Csa05g02440 Chy10g00992 Cme10g00425 . . . Bda11g01222 . . . Bma06g00680 . . . . . Car04g01690 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo15g00816 . 31 253 TCP Transcription Factor Family AT5G23280 62.2 1.3e-64 243.8
Cmo04g02347 . 36 264 TCP Transcription Factor Family AT5G23280 61.0 3.0e-64 242.7
Cmo04g01331 . 145 359 TCP Transcription Factor Family AT5G23280 61.4 1.1e-63 240.7
Cmo18g00812 . 33 230 TCP Transcription Factor Family AT5G23280 58.0 1.2e-57 220.7
Cmo17g00006 . 65 341 TCP Transcription Factor Family AT2G45680 50.5 5.0e-57 219.2
Cmo18g01183 CST 56 146 TCP Transcription Factor Family AT3G47620 92.3 5.3e-41 166.4
Cmo04g01729 CST 59 153 TCP Transcription Factor Family AT3G47620 88.7 5.8e-40 162.9
Cmo13g01176 CCT,ECH 36 134 TCP Transcription Factor Family AT3G47620 83.8 3.8e-39 160.2
Cmo04g01953 . 130 212 TCP Transcription Factor Family AT3G47620 90.4 1.7e-36 151.4
Cmo04g01953 . 130 222 TCP Transcription Factor Family AT1G69690 82.8 2.0e-36 150.6
Cmo14g00744 . 1 313 TCP Transcription Factor Family AT3G27010 55.3 1.7e-61 233.8
Cmo11g01602 . 29 272 TCP Transcription Factor Family AT3G27010 55.5 4.5e-54 209.1
Cmo17g01372 . 269 486 TCP Transcription Factor Family AT3G27010 53.2 6.4e-48 188.7
Cmo15g00816 . 1 252 TCP Transcription Factor Family AT5G08330 60.2 9.7e-65 244.2
Cmo04g02347 . 1 263 TCP Transcription Factor Family AT5G08330 56.7 9.1e-63 237.7
Cmo04g01331 . 117 357 TCP Transcription Factor Family AT5G08330 55.2 1.5e-60 230.3
Cmo18g00812 . 10 228 TCP Transcription Factor Family AT5G08330 56.2 2.3e-58 223.0
Cmo11g00214 CCT,CST 31 179 TCP Transcription Factor Family AT5G60970 56.7 2.3e-38 157.1
Cmo14g01189 . 28 139 TCP Transcription Factor Family AT3G02150 66.4 2.6e-37 153.7
Cmo11g02005 . 8 162 TCP Transcription Factor Family AT2G31070 54.3 1.7e-36 151.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000689 5 3 3 4 4 3 5 3 3 3 3 3 3 3 3 5 3 2 4 3 3 3 3 3 3 3 3 4 3 2 98
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9651 PF03634 TCP 1.20E-37 No_clan Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo04g01729 Cmo_Chr04 FPKM 7.946135 9.827924 12.395705 10.623896 11.671041 11.267683 11.077024 12.123064 12.799335 13.775643