Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g01729 ATGATCATGGATGGTGAAAATGGGATCCGGAGACCTAATTTTCCATTACAATTGTTGGAGAAAAAAGAGGAAGAACACCCATGTTCCACCTCCGCAAACAACGGAACAACAACAACCACCACGACGGTGAATCCGAATCTTCAATCTTCTTCACCTAAGAAGCCACCTCCCAAAAGGGCTACCACCAAAGATCGTCACACGAAAGTCGATGGTCGTGGTCGGAGGATTCGGATGCCGGCCCTTTGTGCTGCTAGGGTTTTTCAGCTTACTAGAGAGCTTGGTCATAAGTCCGACGGTGAAACTATAGAGTGGCTGTTGCAACAGGCGGAGCCGGCTGTCATCGCCGCCACGGGTACAGGTACAATTCCGGCTAATTTCACCTCGCTTAATATTTCTCTCCGTAGTTCCGGCTCCACCGTTCTTGCTCCTTCTCACCTCCGGACGAGCTATTTCAGTCCGACACAATTCGCCGTCAGAACAAGATCTGATCTTTGGGATAGGAGTAATAATAATAATAATCATAATCATAATAATAATAATAATACTCTGGTGGATGATTCCTCTACATTTTTTAATTTCAATTCTCCTAATTACATCAACGCATTCAAGCACGATCAGGGTGGGATTGATGTAACCGACGCTGGAAAGAAACGGCGGCCGGAGAATTCGGAATCGTCATCGGAGAATCCGGTGGGGAATTATTTGGTTCAATCGAGTACCGGGTCGATTCCGGCGAGTCACAGCACTCCGGTGCCGGCAACATTTTGGATGGTGACGAATCCGAGCAATCAAGCGAGTGATCCGATGTGGACATTTCCGTCGGTGAGTAACAGCAGCATGTTTAGAGGGGGAAGCGGCGGCGGTGGCGGTGGTGGCGGCGGGGGGTTTCATTTCATGAATCTTCCACCACCAATGGCTCTTTTGCCAACTGGGCAACAAGTGGGGTCAGGGATCGGGGGTGGTAGCGGTTGTCCGGCGACCGACACCCATTTGGGGATGTTGGCGGCTCTGAGTGCTTATAGGACGATACCGGGTGTGTCAATTTCAGAATCTCCGACAAGAGGAGCGGCAGCTGTTCATCGAGGTGGAAATGAGGCTCATGATTCCACTTCTAATCGTGATCAATCATAG 1131 49.69 MIMDGENGIRRPNFPLQLLEKKEEEHPCSTSANNGTTTTTTTVNPNLQSSSPKKPPPKRATTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLRSSGSTVLAPSHLRTSYFSPTQFAVRTRSDLWDRSNNNNNHNHNNNNNTLVDDSSTFFNFNSPNYINAFKHDQGGIDVTDAGKKRRPENSESSSENPVGNYLVQSSTGSIPASHSTPVPATFWMVTNPSNQASDPMWTFPSVSNSSMFRGGSGGGGGGGGGGFHFMNLPPPMALLPTGQQVGSGIGGGSGCPATDTHLGMLAALSAYRTIPGVSISESPTRGAAAVHRGGNEAHDSTSNRDQS 376
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8756861 8757991 - CmoCh04G017290.1 Cmo04g01729 380704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g01729 376 MobiDBLite consensus disorder prediction 209 224 - -
Cmo04g01729 376 MobiDBLite consensus disorder prediction 22 70 - -
Cmo04g01729 376 Pfam TCP family transcription factor 61 180 IPR017887 -
Cmo04g01729 376 MobiDBLite consensus disorder prediction 225 246 - -
Cmo04g01729 376 MobiDBLite consensus disorder prediction 349 376 - -
Cmo04g01729 376 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 11 356 IPR005333 GO:0003700
Cmo04g01729 376 ProSiteProfiles TCP domain profile. 62 116 IPR017887 -
Cmo04g01729 376 MobiDBLite consensus disorder prediction 204 246 - -
Cmo04g01729 376 MobiDBLite consensus disorder prediction 29 56 - -
Cmo04g01729 376 PANTHER TRANSCRIPTION FACTOR TCP23 11 356 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo04g01729 Cmo18g01183 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01729 Cmo-Chr4:8756861 Cmo04g01953 Cmo-Chr4:9996727 3.98E-45 dispersed
Cmo10g00203 Cmo-Chr10:910288 Cmo04g01729 Cmo-Chr4:8756861 1.27E-94 wgd
Cmo11g00159 Cmo-Chr11:799344 Cmo04g01729 Cmo-Chr4:8756861 3.13E-82 wgd
Cmo13g01176 Cmo-Chr13:9377630 Cmo04g01729 Cmo-Chr4:8756861 8.64E-55 wgd
Cmo18g01183 Cmo-Chr18:11881839 Cmo04g01729 Cmo-Chr4:8756861 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9651 PF03634 TCP 1.20E-37 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g01729 - - cmax:111485089 637.876