Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g01742 ATGGCTTCCGACCCAGTCGCTTCTGAGCTTTCTTCTGCCTTCGAAAGCCTGGTTTTCATCAACAGAGACATCTCTCCCATCGCACCCCTTTTCTTGGGTTTCGCCTCCGTCATCCGTTCAGCCGACCCTCAATCCCCAAATCCAGAAATTCAAACAATACCCACTTTGCCGAACCGATTCATCTTCTTTAATCCCTTTCCCCCTCAATTGATGGTGATCCAAGCCACTCCCAAGGAAGGCCAACCCCCTGCCTCTAAAGCCTCCATCAAAGCCATGCCCTCTCTCCCTGTCTCTGAACTTACTGAATGTGTGATTTGTTTAGAGGAGATTGAAGCGGGTGACCTCGCCAAACAAATGCCCTGTTCCCATAAATTCCATGGCGATTGCATTGAGAAGTGGCTGGAGTTACATGGGTCGTGCCCTATTTGTAGATATCAGATGCCAATTGACGATGAAGATGAAGGAAAGAAGGTTGATGAAGAAGGGTCAGAGAGGAGAGGAGAAAGGGAGATTTGGGTGAGTTTCTCTTTTGATAATGTTACCAGAAATGGGGAATCTGTTCAAACCCCCCCTTCAACATATTCTGATCATTCTTTTGTACAGTGA 606 47.19 MASDPVASELSSAFESLVFINRDISPIAPLFLGFASVIRSADPQSPNPEIQTIPTLPNRFIFFNPFPPQLMVIQATPKEGQPPASKASIKAMPSLPVSELTECVICLEEIEAGDLAKQMPCSHKFHGDCIEKWLELHGSCPICRYQMPIDDEDEGKKVDEEGSERRGEREIWVSFSFDNVTRNGESVQTPPSTYSDHSFVQ 201
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8810389 8810994 + CmoCh04G017420.1 Cmo04g01742 380717

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g01742 201 Pfam Ring finger domain 102 144 IPR001841 -
Cmo04g01742 201 SUPERFAMILY RING/U-box 102 150 - -
Cmo04g01742 201 ProSiteProfiles Zinc finger RING-type profile. 103 144 IPR001841 -
Cmo04g01742 201 CDD RING-H2_PA-TM-RING 102 144 - -
Cmo04g01742 201 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 72 150 IPR013083 -
Cmo04g01742 201 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MPSR1 74 160 - -
Cmo04g01742 201 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 74 160 - -
Cmo04g01742 201 SMART ring_2 103 143 IPR001841 -
Cmo04g01742 201 MobiDBLite consensus disorder prediction 181 201 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g01742 - - - cmos:111458226 391.734
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo04g01742 Cmo18g01167 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01742 Cmo-Chr4:8810389 Cmo13g00999 Cmo-Chr13:8520524 1.32E-24 dispersed
Cmo01g00512 Cmo-Chr1:2463141 Cmo04g01742 Cmo-Chr4:8810389 2.18E-45 wgd
Cmo15g00280 Cmo-Chr15:1337886 Cmo04g01742 Cmo-Chr4:8810389 1.78E-32 wgd
Cmo18g01167 Cmo-Chr18:11822878 Cmo04g01742 Cmo-Chr4:8810389 2.43E-97 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g922 . . . . . Bpe10g00877 Bma14g01646 . Cmo04g01742 Cmo18g01167 . Cma18g01147 . Car18g01056 Sed08g1981 Cpe09g00183 Cpe01g01470 Bhi07g01557 Tan04g1072 Cmetu10g1747 Lac13g0324 Hepe10g1749 . . Cla05g02437 Cam05g2622 Cec05g2655 Cco05g2693 Clacu05g2624 Cmu05g2478 Cre05g2591 . . . . Lsi04g00415 Csa05g02459 Chy10g01009 Cme10g00409 . . . . . . . . . . . . . Car04g01702 Car15g00265 Cpe13g00954 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003724 2 1 0 1 1 1 4 1 1 1 1 1 1 1 1 3 1 2 3 1 1 1 2 2 2 3 3 1 2 1 46
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo04g01742 Cmo_Chr04 FPKM 756.291931 783.603882 664.766602 650.880493 904.038757 1092.991333 784.927429 1423.748169 1445.791138 1250.361694