Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g01748 ATGGCTTCTGTCCTTGTCTTTTTGGCAGCTTTCTATGCCGTAGTGTCCTCTGTTGATGCCTATGCAGGTGGAGGCTGGACTAGTGCTCATGCCACCTTCTATGGTGGGAGTGATGCTTCTGGGACGATGGGTGGGGCTTGTGGGTATGGCAACTTATACAGCCAAGGCTATGGGACAAACACTGCTGCTCTGAGTACGGCTCTGTTCAACAATGGCTTGAGCTGTGGGTCTTGCTATGAGATTAGGTGTGCCAGTGACCCTAAATGGTGCTTGCCAGGCTCCATTGTGGTAACAGCCACCAATTTCTGTCCTCCAAACAATGCCCTACCCAACAACGCTGGAGGCTGGTGCAACCCTCCTCTACAACACTTTGATCTCTCTCAGCCTGTATTCCAACACATTGCTCAGTATAAAGCAGGAATTGTGCCTGTTGCTTACAGAAGGGTACCCTGCAGGAGAAGGGGAGGTATAAGATTCACCATCAATGGGCACTCCTACTTCAACCTGGTTCTCATCACAAACGTGGGTGGTGCTGGTGATGTACACGCAGTTTCCATCAAAGGATCAAGAACTGGTTGGCAAGCAATGTCTAGGAACTGGGGACAGAACTGGCAGAGCAACAGTTACCTCAATGGCCAAAGCCTGTCGTTCAAGGTCACCACCAGCGACGGCCGCACAGTCATCGCTAACAACGCTGTCCCAGCCGGCTGGTCCTTTGGACAGACATACAGTGGTGCCCAATTCTAA 747 51.41 MASVLVFLAAFYAVVSSVDAYAGGGWTSAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIRCASDPKWCLPGSIVVTATNFCPPNNALPNNAGGWCNPPLQHFDLSQPVFQHIAQYKAGIVPVAYRRVPCRRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQAMSRNWGQNWQSNSYLNGQSLSFKVTTSDGRTVIANNAVPAGWSFGQTYSGAQF 248
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8826880 8828479 - CmoCh04G017480.1 Cmo04g01748 380723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g01748 248 Pfam Expansin C-terminal domain 157 234 IPR007117 -
Cmo04g01748 248 PANTHER EXPANSIN 7 248 - -
Cmo04g01748 248 SUPERFAMILY PHL pollen allergen 153 244 IPR036749 -
Cmo04g01748 248 Gene3D - 12 152 IPR036908 -
Cmo04g01748 248 Gene3D - 156 248 IPR036749 -
Cmo04g01748 248 Pfam Lytic transglycolase 61 146 IPR009009 -
Cmo04g01748 248 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 44 156 IPR007112 -
Cmo04g01748 248 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 166 245 IPR007117 -
Cmo04g01748 248 PRINTS Expansin/Lol pI family signature 25 40 IPR007118 GO:0005576
Cmo04g01748 248 PRINTS Expansin/Lol pI family signature 43 61 IPR007118 GO:0005576
Cmo04g01748 248 PRINTS Expansin/Lol pI family signature 65 83 IPR007118 GO:0005576
Cmo04g01748 248 PRINTS Expansin/Lol pI family signature 139 155 IPR007118 GO:0005576
Cmo04g01748 248 PRINTS Expansin/Lol pI family signature 193 207 IPR007118 GO:0005576
Cmo04g01748 248 PRINTS Expansin/Lol pI family signature 231 245 IPR007118 GO:0005576
Cmo04g01748 248 PANTHER EXPANSIN-A15 7 248 IPR002963 GO:0009664
Cmo04g01748 248 SUPERFAMILY Barwin-like endoglucanases 8 174 IPR036908 -
Cmo04g01748 248 SMART dpbb_1 61 146 IPR007112 -
Cmo04g01748 248 PRINTS Expansin signature 56 70 IPR002963 GO:0009664
Cmo04g01748 248 PRINTS Expansin signature 83 94 IPR002963 GO:0009664
Cmo04g01748 248 PRINTS Expansin signature 95 105 IPR002963 GO:0009664
Cmo04g01748 248 PRINTS Expansin signature 114 131 IPR002963 GO:0009664
Cmo04g01748 248 PRINTS Expansin signature 131 144 IPR002963 GO:0009664
Cmo04g01748 248 PRINTS Expansin signature 155 167 IPR002963 GO:0009664
Cmo04g01748 248 PRINTS Expansin signature 167 188 IPR002963 GO:0009664
Cmo04g01748 248 PRINTS Expansin signature 202 223 IPR002963 GO:0009664
Cmo04g01748 248 PRINTS Expansin signature 231 247 IPR002963 GO:0009664
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo04g01748 Cmo18g01159 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00211 Cmo-Chr4:1056541 Cmo04g01748 Cmo-Chr4:8826880 1.28E-72 dispersed
Cmo04g01132 Cmo-Chr4:5778098 Cmo04g01748 Cmo-Chr4:8826880 5.16E-142 dispersed
Cmo04g01748 Cmo-Chr4:8826880 Cmo15g00178 Cmo-Chr15:811890 6.26E-141 dispersed
Cmo05g00324 Cmo-Chr5:1440978 Cmo04g01748 Cmo-Chr4:8826880 1.48E-118 dispersed
Cmo07g01042 Cmo-Chr7:5279087 Cmo04g01748 Cmo-Chr4:8826880 3.09E-124 dispersed
Cmo12g00346 Cmo-Chr12:2146053 Cmo04g01748 Cmo-Chr4:8826880 1.62E-120 dispersed
Cmo13g00120 Cmo-Chr13:694183 Cmo04g01748 Cmo-Chr4:8826880 1.72E-114 dispersed
Cmo20g00433 Cmo-Chr20:2031500 Cmo04g01748 Cmo-Chr4:8826880 3.00E-127 dispersed
Cmo01g00834 Cmo-Chr1:4452811 Cmo04g01748 Cmo-Chr4:8826880 1.11E-118 wgd
Cmo01g00515 Cmo-Chr1:2473671 Cmo04g01748 Cmo-Chr4:8826880 8.66E-149 wgd
Cmo10g00214 Cmo-Chr10:951009 Cmo04g01748 Cmo-Chr4:8826880 6.17E-146 wgd
Cmo11g00173 Cmo-Chr11:837883 Cmo04g01748 Cmo-Chr4:8826880 9.76E-148 wgd
Cmo15g00274 Cmo-Chr15:1315251 Cmo04g01748 Cmo-Chr4:8826880 1.11E-132 wgd
Cmo18g01159 Cmo-Chr18:11792230 Cmo04g01748 Cmo-Chr4:8826880 1.68E-159 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g01748 - - csv:101217956 496.123