Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g01756 ATGAAGTTCGGCAAGCAATTTGCCGCTCAGATGGTTCCTGAATGGCAGCAAGCCTACATGGATTACGAGTTCCTCAAGTCCCTCTTGAAGCAAATCGACACCTTCAACAAAGCCCACGCTCGAAACCACCCCTTAACCGACTCTGCCCAGCTCAGACGGACCCTCAGCCTCTACAGGGCTTTCAGCGGCCTCACCCTACGCCACAGCCACAGCCATGGTCACGGTCACGGTCACGCCCACGCCCACGCCCATAACAGCCATCCTACAAGTCCAGGGTCGCCGCAGGATGCGGTGGAGGAGCAAGCTATATTGGTGAATGCGGTGAGTCGGGACGGGACGAGGAAGTATCGGACGACGTTTTTGATGGCGGATGAGGAAGGGGGAGAGTATGAGTTGGTGTACTTTAGGTCGTTGGATAGAGAGTTCAATAAAGTGGAGAAGTTTTATAAGTCGAAAGTGGAGGAAGTTGTGAAGGAGGCGAGTGTGTTGAATAAGCAAATGGATGCTTTGATTGCTTTCAGAATCAAAGTGGAGAATCCAAAGGGTGTTTGGGATTTCTCCGGCGACCGGTCGGAGGAGATTTCAAAGCTGGCTACTGATATTGCGGTTTCTACTGCTGCTTTGTCATCTTCCACTCCTTCTGGGGTCCGAGCTAGCAGACGGGTTCATATAGCAATGGACTCCATAGAAGAAGGTGGGTCGAGCCACAAAGAAAGTCATAAACCAGATAACGAATCAAAAGGAGAAAAAGATGGAAAGGAAGAGAAGAACACAAAGGATGAAGAAGGGAAAGAAACGAAGATGAAGGCCAACAGACCACCTCCACTTGAACTTCTTGATCGTGTAACAATGAACACAACTCAAGAGACACCAATATCCACCATTAAAGGCCTTTTCAACTTCCCCAAGAACTCAGAACTTCAATTCAACAGAGAAAATCTCAACAAAATTGAGAACCAACTCAAGAGGGCTTTTGTTGTGTTTTACCACAAACTCAGGCTGCTAAAAAGCTTCAGCTTCTTGAATACTCTGGCATTTTCAAAGATAATGAAGAAATATGATAAGATTACTTCAAGAAATGCAGGAAAGTCATACATGAAGATGGTGGACAGCTCTTATCTTGGGAGTTCTGATGAGGTTTCCAAGCTAATGGAGAGGGTGGAAGCTGCATTTATCAAACACTTTTGCAACGCTAATCGGACCAAAGGAATGAATATCTTGCGACCCAAAGCAAAGAAAGAAAGACATAGAATTACATTTTCAGTTGGTTTCTTTGCTGGCTGCACTGTAGCTCTTATCGTCGCCCTCGCTTTCGTTACTCGAGCCCGACATTTACTAGACAGAGAAGGCAGCACCCAGTATATGGAAACCATGTTTCCTCTTTACAGCTTGTTTGGATTCGTTGTGTTGCACCTGCTAATGTATGCAGCAAACATATACTTTTGGAGGCGATACCAAGTGAATTACTCCTTCATATTTGGGTTCAAACAAGGCACTGAGTTGGCCTACCGAGAGGTTCTTTTTCCCAGTTTTGCTGTGGCAACTCTTGCTTTAGCCTGTGTTCTTTCTAACCTTGACATGGAGATGGACCCTATAACGAAGTCATATCAAGCAGTCACTGAGCTTCTCCCTTTGGTTTTGCTCCTTGTTGTGATTGCAGTCTTCTTGTGTCCACTCAACATCTTATATCGTTCGAGTCGCTTGTTCTGCATAAAAACTTTGTACCATTGCATATGTGCTCCCCTTTACACGGTCGTCTTCCCTGATTTCTTTTTGGCAGATCAGTTAACCAGCCAGGTGCAAGCACTTCGTAGCTTGGAATTCTACATTTGCTATTACGGTTGGGGAGATTACAAACATCGACGGGATACTTGTCGAACCAACACTGTATTCAACACTTTCAGCTTCATCATTGCTGTTATTCCATATTTGTCTCGTCTCCTTCAGTGTCTCAGGCGACTGTTTGAGGAGAAAGATACAATGCAGGGATATAACGGAGTGAAGTACTTCTTGACAATTGTAGCTGTTTGCTTGAGGACAGCTTACAGTCTAAACAAGGGAATAACCTGGAAAGTGTTGGCGGCAGTGTTCTCAGCTGTTGCTGCCATTATATGCACGTATTGGGACCTCGCCATCGACTGGGGGCTTTTGCAGCGCCATTCGAAAAACCGATGGCTAAGAGACAAACTACTTGTTGGTCATAACAGTGTATATTTTGTGGCAATGTTCTTGAATGTTTTACTGAGGTTTGCTTGGCTGCAAACTGTGTTGGATTTCAAGTTCTCCAACCTGCATACAGAAGGTTTGATTACAATAGTGGCCAGCCTTGAGATCATTCGTCGTGGCATATGGAATTTCTTCAGGTTGGAGAATGAGCATCTGAACAATGTTGGGAGGTACCGTGCATTTAAATCTGTACCACTGCCTTTCAACTACGATGAAGACGATGACAAAGATGATTAA 2463 45.07 MKFGKQFAAQMVPEWQQAYMDYEFLKSLLKQIDTFNKAHARNHPLTDSAQLRRTLSLYRAFSGLTLRHSHSHGHGHGHAHAHAHNSHPTSPGSPQDAVEEQAILVNAVSRDGTRKYRTTFLMADEEGGEYELVYFRSLDREFNKVEKFYKSKVEEVVKEASVLNKQMDALIAFRIKVENPKGVWDFSGDRSEEISKLATDIAVSTAALSSSTPSGVRASRRVHIAMDSIEEGGSSHKESHKPDNESKGEKDGKEEKNTKDEEGKETKMKANRPPPLELLDRVTMNTTQETPISTIKGLFNFPKNSELQFNRENLNKIENQLKRAFVVFYHKLRLLKSFSFLNTLAFSKIMKKYDKITSRNAGKSYMKMVDSSYLGSSDEVSKLMERVEAAFIKHFCNANRTKGMNILRPKAKKERHRITFSVGFFAGCTVALIVALAFVTRARHLLDREGSTQYMETMFPLYSLFGFVVLHLLMYAANIYFWRRYQVNYSFIFGFKQGTELAYREVLFPSFAVATLALACVLSNLDMEMDPITKSYQAVTELLPLVLLLVVIAVFLCPLNILYRSSRLFCIKTLYHCICAPLYTVVFPDFFLADQLTSQVQALRSLEFYICYYGWGDYKHRRDTCRTNTVFNTFSFIIAVIPYLSRLLQCLRRLFEEKDTMQGYNGVKYFLTIVAVCLRTAYSLNKGITWKVLAAVFSAVAAIICTYWDLAIDWGLLQRHSKNRWLRDKLLVGHNSVYFVAMFLNVLLRFAWLQTVLDFKFSNLHTEGLITIVASLEIIRRGIWNFFRLENEHLNNVGRYRAFKSVPLPFNYDEDDDKDD 820
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8859495 8864772 - CmoCh04G017560.1 Cmo04g01756 380731

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g01756 820 Pfam EXS family 458 794 IPR004342 GO:0016021
Cmo04g01756 820 ProSiteProfiles SPX domain profile. 1 367 IPR004331 -
Cmo04g01756 820 MobiDBLite consensus disorder prediction 69 83 - -
Cmo04g01756 820 CDD SPX_PHO1_like 2 363 IPR034092 -
Cmo04g01756 820 Pfam SPX domain 1 369 IPR004331 -
Cmo04g01756 820 PANTHER XENOTROPIC AND POLYTROPIC RETROVIRUS RECEPTOR 1-RELATED 1 820 - -
Cmo04g01756 820 MobiDBLite consensus disorder prediction 228 275 - -
Cmo04g01756 820 PANTHER PHOSPHATE TRANSPORTER PHO1 HOMOLOG 3 1 820 - -
Cmo04g01756 820 MobiDBLite consensus disorder prediction 228 271 - -
Cmo04g01756 820 MobiDBLite consensus disorder prediction 69 96 - -
Cmo04g01756 820 ProSiteProfiles EXS domain profile. 626 820 IPR004342 GO:0016021
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g01756 - - - csv:101215812 1402.5
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01756 Cmo-Chr4:8859495 Cmo12g00679 Cmo-Chr12:4645578 0 dispersed
Cmo15g00265 Cmo-Chr15:1278294 Cmo04g01756 Cmo-Chr4:8859495 0 wgd
Cmo18g01150 Cmo-Chr18:11756744 Cmo04g01756 Cmo-Chr4:8859495 0 wgd
Cmo04g01756 Cmo-Chr4:8859495 Cmo04g02908 Cmo-Chr4:20658145 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g966 . . . . . . . . Cmo04g01756 . . . . . . . Cpe01g01483 . . . . . . . . . . . . . . . . . . . Csa05g02482 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000170 6 7 5 5 5 5 11 5 5 5 6 5 10 5 5 10 5 0 5 5 5 8 5 7 8 5 5 12 17 6 193
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo04g01756 Cmo_Chr04 FPKM 0.897959 1.531342 2.187879 1.718304 7.012516 6.223678 6.405255 0.0 0.0 0.0