Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g01759 ATGAACTCTAAACCTTCTGGAACTTCCGCCGGTTTGCCGGTGCCGGGGAGCTCCGGAGGCAAGGGAAACTCGTCGTCGTCGTCATCGTCATCGGCATCGGGTACGAGCAAGGAGAAGCAAAAGGAGAAAGCGAGAGTGAGTAGAACGTCACAGATACTATGGCACGCTCACCAAAATGATTCTGCTGCTGTTCGCAAGCTCCTGGAGGAGGATCACTCCCTTGTCCATGCCAGAGATTATGACAACCGCACTCCTCTCCATGTTGCATCGCTTCATGGCTGGATCGTCGTTGCCAAGTGTTTGATCGAACACGGTGCTGATGTTAATGCCCAAGATCGCTGGAAGAACACACCGCTAGCTGATGCAGAAGGAGCTAAAAAGTATGACATAATTGAGTTATTAAAATCGTATGGTGGCCTTTCCTATGGTCAAAATGGAAGCCATTTTGAACCGAAGCCTGTTCTTCCTCCTCTGCCAAATAAATGTGATTGGGAAGTTGATCCTTCTGAACTGGATTTTTCAAACTCAGCTATTATTGGCAAGGGGTCCTTCGGGGAAATTTTGAAGGCCTATTGGCGTGGAACCCCTGTGGCTGTCAAGCGTATTCTTCCATCACTTTCAGATGATAGACTCGTGATTCAGGACTTTCGACATGAGGTTAATCTGTTGGTGAAGCTACGCCACCCTAACATTGTCCAATTTCTTGGAGCTGTCACCGAGAAGAAACCACTTATGTTAATCACTGAATATTTAAGAGGGGGCGATCTTCACCAGTACCTCAAGGACAAAGGTTCCCTCAGTCCTGCTACGGCCATAAATTTTGCACAGGACATCGCCAGGGGAATGACTTATCTCCACAACGAGCCAAATGTTATAATTCACCGTGACCTAAAACCTAGGAACGTTCTTTTAGTCAGCTCAGGTGTGGAGCATCTAAAAGTTGGCGACTTTGGTCTAAGCAAGCTCATCAAGGTTCAGAATTCACATGATGTTTACAAAATGACAGGCGAGACCGGGAGCTACCGGTATATGGCTCCTGAAGTTTTTAAGCACAGAAAATATGATAAGAAAGTGGACGTGTTTTCTTTTGCGATGATATTATACGAGATGCTGGAGGGAGACCCTCCACTGGCAAATTATGAGCCGTATGAAGCTGCCAAATACGTGGCTGAAGGTCATAGACCGGTGTTCCGTGCGAAAGGATACCTTTCTGTTCTAAGAGAGTTAACTGTAGAATATCAAGGAAAGATATACCTACTGATCATCACTGGAATTTGTTTAATGCATAGCATTGAAAGTGATGGTATGATTTCATGTGTGAATGCAGTACGGTATGTGGTTCCTAACATTCAGCTTTCTTCTGCTCGATTATATTCCCCTGAAGTTGCTAGTTTCTCTTGA 1401 45.47 MNSKPSGTSAGLPVPGSSGGKGNSSSSSSSSASGTSKEKQKEKARVSRTSQILWHAHQNDSAAVRKLLEEDHSLVHARDYDNRTPLHVASLHGWIVVAKCLIEHGADVNAQDRWKNTPLADAEGAKKYDIIELLKSYGGLSYGQNGSHFEPKPVLPPLPNKCDWEVDPSELDFSNSAIIGKGSFGEILKAYWRGTPVAVKRILPSLSDDRLVIQDFRHEVNLLVKLRHPNIVQFLGAVTEKKPLMLITEYLRGGDLHQYLKDKGSLSPATAINFAQDIARGMTYLHNEPNVIIHRDLKPRNVLLVSSGVEHLKVGDFGLSKLIKVQNSHDVYKMTGETGSYRYMAPEVFKHRKYDKKVDVFSFAMILYEMLEGDPPLANYEPYEAAKYVAEGHRPVFRAKGYLSVLRELTVEYQGKIYLLIITGICLMHSIESDGMISCVNAVRYVVPNIQLSSARLYSPEVASFS 466
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8876062 8881594 - CmoCh04G017590.1 Cmo04g01759 380734
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g01759 466 SUPERFAMILY Ankyrin repeat 50 139 IPR036770 -
Cmo04g01759 466 Gene3D Phosphorylase Kinase; domain 1 158 251 - -
Cmo04g01759 466 ProSitePatterns Serine/Threonine protein kinases active-site signature. 292 304 IPR008271 GO:0004672|GO:0006468
Cmo04g01759 466 Pfam Protein tyrosine and serine/threonine kinase 177 395 IPR001245 GO:0004672|GO:0006468
Cmo04g01759 466 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 30 411 - -
Cmo04g01759 466 SMART ANK_2a 81 110 IPR002110 GO:0005515
Cmo04g01759 466 Gene3D - 20 147 IPR036770 -
Cmo04g01759 466 MobiDBLite consensus disorder prediction 1 35 - -
Cmo04g01759 466 PIRSF ILK 11 413 - -
Cmo04g01759 466 ProSitePatterns Protein kinases ATP-binding region signature. 179 200 IPR017441 GO:0005524
Cmo04g01759 466 Gene3D Transferase(Phosphotransferase) domain 1 252 413 - -
Cmo04g01759 466 ProSiteProfiles Ankyrin repeat profile. 81 113 IPR002110 GO:0005515
Cmo04g01759 466 CDD STKc_MAP3K-like 179 395 - -
Cmo04g01759 466 ProSiteProfiles Protein kinase domain profile. 173 466 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo04g01759 466 SUPERFAMILY Protein kinase-like (PK-like) 172 398 IPR011009 -
Cmo04g01759 466 SMART serkin_6 173 440 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo04g01759 466 Pfam Ankyrin repeats (3 copies) 52 112 IPR002110 GO:0005515
Cmo04g01759 466 ProSiteProfiles Ankyrin repeat region circular profile. 81 113 - -
Cmo04g01759 466 PANTHER SERINE/THREONINE-PROTEIN KINASE STY8-LIKE 30 411 - -
Cmo04g01759 466 MobiDBLite consensus disorder prediction 1 54 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01759 Cmo-Chr4:8876062 Cmo20g00274 Cmo-Chr20:1334263 5.87E-95 dispersed
Cmo18g01147 Cmo-Chr18:11734150 Cmo04g01759 Cmo-Chr4:8876062 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74284 PF07714 PK_Tyr_Ser-Thr 1.10E-55 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g01759 - - csv:101215575 748.043