Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo04g01759 | ATGAACTCTAAACCTTCTGGAACTTCCGCCGGTTTGCCGGTGCCGGGGAGCTCCGGAGGCAAGGGAAACTCGTCGTCGTCGTCATCGTCATCGGCATCGGGTACGAGCAAGGAGAAGCAAAAGGAGAAAGCGAGAGTGAGTAGAACGTCACAGATACTATGGCACGCTCACCAAAATGATTCTGCTGCTGTTCGCAAGCTCCTGGAGGAGGATCACTCCCTTGTCCATGCCAGAGATTATGACAACCGCACTCCTCTCCATGTTGCATCGCTTCATGGCTGGATCGTCGTTGCCAAGTGTTTGATCGAACACGGTGCTGATGTTAATGCCCAAGATCGCTGGAAGAACACACCGCTAGCTGATGCAGAAGGAGCTAAAAAGTATGACATAATTGAGTTATTAAAATCGTATGGTGGCCTTTCCTATGGTCAAAATGGAAGCCATTTTGAACCGAAGCCTGTTCTTCCTCCTCTGCCAAATAAATGTGATTGGGAAGTTGATCCTTCTGAACTGGATTTTTCAAACTCAGCTATTATTGGCAAGGGGTCCTTCGGGGAAATTTTGAAGGCCTATTGGCGTGGAACCCCTGTGGCTGTCAAGCGTATTCTTCCATCACTTTCAGATGATAGACTCGTGATTCAGGACTTTCGACATGAGGTTAATCTGTTGGTGAAGCTACGCCACCCTAACATTGTCCAATTTCTTGGAGCTGTCACCGAGAAGAAACCACTTATGTTAATCACTGAATATTTAAGAGGGGGCGATCTTCACCAGTACCTCAAGGACAAAGGTTCCCTCAGTCCTGCTACGGCCATAAATTTTGCACAGGACATCGCCAGGGGAATGACTTATCTCCACAACGAGCCAAATGTTATAATTCACCGTGACCTAAAACCTAGGAACGTTCTTTTAGTCAGCTCAGGTGTGGAGCATCTAAAAGTTGGCGACTTTGGTCTAAGCAAGCTCATCAAGGTTCAGAATTCACATGATGTTTACAAAATGACAGGCGAGACCGGGAGCTACCGGTATATGGCTCCTGAAGTTTTTAAGCACAGAAAATATGATAAGAAAGTGGACGTGTTTTCTTTTGCGATGATATTATACGAGATGCTGGAGGGAGACCCTCCACTGGCAAATTATGAGCCGTATGAAGCTGCCAAATACGTGGCTGAAGGTCATAGACCGGTGTTCCGTGCGAAAGGATACCTTTCTGTTCTAAGAGAGTTAACTGTAGAATATCAAGGAAAGATATACCTACTGATCATCACTGGAATTTGTTTAATGCATAGCATTGAAAGTGATGGTATGATTTCATGTGTGAATGCAGTACGGTATGTGGTTCCTAACATTCAGCTTTCTTCTGCTCGATTATATTCCCCTGAAGTTGCTAGTTTCTCTTGA | 1401 | 45.47 | MNSKPSGTSAGLPVPGSSGGKGNSSSSSSSSASGTSKEKQKEKARVSRTSQILWHAHQNDSAAVRKLLEEDHSLVHARDYDNRTPLHVASLHGWIVVAKCLIEHGADVNAQDRWKNTPLADAEGAKKYDIIELLKSYGGLSYGQNGSHFEPKPVLPPLPNKCDWEVDPSELDFSNSAIIGKGSFGEILKAYWRGTPVAVKRILPSLSDDRLVIQDFRHEVNLLVKLRHPNIVQFLGAVTEKKPLMLITEYLRGGDLHQYLKDKGSLSPATAINFAQDIARGMTYLHNEPNVIIHRDLKPRNVLLVSSGVEHLKVGDFGLSKLIKVQNSHDVYKMTGETGSYRYMAPEVFKHRKYDKKVDVFSFAMILYEMLEGDPPLANYEPYEAAKYVAEGHRPVFRAKGYLSVLRELTVEYQGKIYLLIITGICLMHSIESDGMISCVNAVRYVVPNIQLSSARLYSPEVASFS | 466 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 8876062 | 8881594 | - | CmoCh04G017590.1 | Cmo04g01759 | 380734 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo04g01759 | 466 | SUPERFAMILY | Ankyrin repeat | 50 | 139 | IPR036770 | - | |
Cmo04g01759 | 466 | Gene3D | Phosphorylase Kinase; domain 1 | 158 | 251 | - | - | |
Cmo04g01759 | 466 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 292 | 304 | IPR008271 | GO:0004672|GO:0006468 | |
Cmo04g01759 | 466 | Pfam | Protein tyrosine and serine/threonine kinase | 177 | 395 | IPR001245 | GO:0004672|GO:0006468 | |
Cmo04g01759 | 466 | PANTHER | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED | 30 | 411 | - | - | |
Cmo04g01759 | 466 | SMART | ANK_2a | 81 | 110 | IPR002110 | GO:0005515 | |
Cmo04g01759 | 466 | Gene3D | - | 20 | 147 | IPR036770 | - | |
Cmo04g01759 | 466 | MobiDBLite | consensus disorder prediction | 1 | 35 | - | - | |
Cmo04g01759 | 466 | PIRSF | ILK | 11 | 413 | - | - | |
Cmo04g01759 | 466 | ProSitePatterns | Protein kinases ATP-binding region signature. | 179 | 200 | IPR017441 | GO:0005524 | |
Cmo04g01759 | 466 | Gene3D | Transferase(Phosphotransferase) domain 1 | 252 | 413 | - | - | |
Cmo04g01759 | 466 | ProSiteProfiles | Ankyrin repeat profile. | 81 | 113 | IPR002110 | GO:0005515 | |
Cmo04g01759 | 466 | CDD | STKc_MAP3K-like | 179 | 395 | - | - | |
Cmo04g01759 | 466 | ProSiteProfiles | Protein kinase domain profile. | 173 | 466 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo04g01759 | 466 | SUPERFAMILY | Protein kinase-like (PK-like) | 172 | 398 | IPR011009 | - | |
Cmo04g01759 | 466 | SMART | serkin_6 | 173 | 440 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo04g01759 | 466 | Pfam | Ankyrin repeats (3 copies) | 52 | 112 | IPR002110 | GO:0005515 | |
Cmo04g01759 | 466 | ProSiteProfiles | Ankyrin repeat region circular profile. | 81 | 113 | - | - | |
Cmo04g01759 | 466 | PANTHER | SERINE/THREONINE-PROTEIN KINASE STY8-LIKE | 30 | 411 | - | - | |
Cmo04g01759 | 466 | MobiDBLite | consensus disorder prediction | 1 | 54 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo04g01759 | Cmo-Chr4:8876062 | Cmo20g00274 | Cmo-Chr20:1334263 | 5.87E-95 | dispersed | |
Cmo18g01147 | Cmo-Chr18:11734150 | Cmo04g01759 | Cmo-Chr4:8876062 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
74284 | PF07714 | PK_Tyr_Ser-Thr | 1.10E-55 | CL0016 | Cmo | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo04g01759 | - | - | csv:101215575 | 748.043 |