Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g01766 ATGGGTGACGATGAAGAAGAACCGCCACCGTCCTCGCCGCAACCGCCCTCCAAACTTAAGCCCCGTCCCTTGAGGCCCACTATTAATCTGCCGCCACGGACCTCTATGGAGTCGCTCTTCAGCGGTGGCCTCGGTTTGGGATTTGGGTTTAGCCCAGGGCCGATGACCCTCGTCTCCAGCTTCTTCTCCGATCCCGATGACTGCAAGTCTTTTTCTCAGCTCCTCGCTGGAGCCATGACATCGCCGGTGGCTGTTCCTCCGCTGGAATCTGAGTTCAAAGGCCCTCCCGGTCTGCTCGATTCTCCTGGGCTTCTTTCGCCTAGTCAAGGACCTTTTGGAATGACCCATCAGCAGGCTTTGGCTCAGGTTACTATGCAGGCTGCAGAAGCCTATTCTCATAAGCAAATACAAGCAGCATCTTTGTCACCATCAGTAGCACCCTTTGCGTCGTCCTTAGAGCTTTCGACGACCTTTCTGGGCGAGAAGACTAAAGAACAGCCGATGCAACCGCCATTCCCGAACGCTGGAGTTGCATCCAAGGAGGTATTGGATATCTCTCAATCAGAGCAGAGAGTGCAATCTTCTTTGTGTACTGTTGGTAGACCTGGTGATGATGGCTACAATTGGAGAAAATATGGACAGAAACAAGTGAAGGGCGGTGAATTTCCTCGAAGCTACTATAAGTGCACGCACCCGAATTGTCCTGTTAGGAAAAAGGTTGAACGATCTCTTGAAGGACAAGTCACTGAGATTATCTACAAGGGGGAGCACAACCACAAACAACCTCAACCGAACAAGCGGGGAAAGGATGTCGGAAATTCTAACGGATATTCAAGTACTCATGGAAATCCTGAGCTATGTTCTCAAGTTCAGAGTAAATTGAACGAGCTGAAAGATGTGTCTTCCATAAAGAATGATCAAGAATCGAGTCATGTTACGCATGAAAAGTTGTCAGGTACTAGTGATGGTGAGGGAGGGAGTGAGATAGAGACTGGAGTGAATCGAAAAGATGACGATGAGCCTGATGCCAAGAGACGGAATACTGAGGTAAGGCTTCCTGAGCCAGCATCTTCTCATAGGACTCTTGCAGAATCCAGAATCATTGTGCAGACTACAAGCGAAGTCGATCTATTGGACGATGGCTACAGGTGGAGAAAGTATGGGCAGAAAATTGTCAAAGGCAACCCTTACCCCAGGAGCTACTATAAATGCACGACACCAGGATGCAATGTTCGTAAACATGTAGAGAGAGCTTCAATGGACCCGAAAGCTGTCATAACGACATATGAGGGTAAACACAATCATGACGTTCCAGCTGGTAAAATCAGCAGCCACAGGTCAGTCAACAGTAACGTTCCACAGCTAAAATCACATAATATTTCAAATAAGAACAATGATCATGGAAACTCCCGTCATCAGCATGCTGGAGTTCTACGGTTAAAGGAAGAACAAATAACGTAG 1461 47.98 MGDDEEEPPPSSPQPPSKLKPRPLRPTINLPPRTSMESLFSGGLGLGFGFSPGPMTLVSSFFSDPDDCKSFSQLLAGAMTSPVAVPPLESEFKGPPGLLDSPGLLSPSQGPFGMTHQQALAQVTMQAAEAYSHKQIQAASLSPSVAPFASSLELSTTFLGEKTKEQPMQPPFPNAGVASKEVLDISQSEQRVQSSLCTVGRPGDDGYNWRKYGQKQVKGGEFPRSYYKCTHPNCPVRKKVERSLEGQVTEIIYKGEHNHKQPQPNKRGKDVGNSNGYSSTHGNPELCSQVQSKLNELKDVSSIKNDQESSHVTHEKLSGTSDGEGGSEIETGVNRKDDDEPDAKRRNTEVRLPEPASSHRTLAESRIIVQTTSEVDLLDDGYRWRKYGQKIVKGNPYPRSYYKCTTPGCNVRKHVERASMDPKAVITTYEGKHNHDVPAGKISSHRSVNSNVPQLKSHNISNKNNDHGNSRHQHAGVLRLKEEQIT 486
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8911214 8914503 - CmoCh04G017660.1 Cmo04g01766 380741
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g01766 486 Pfam WRKY DNA -binding domain 379 435 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo04g01766 486 Pfam WRKY DNA -binding domain 204 260 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo04g01766 486 MobiDBLite consensus disorder prediction 300 318 - -
Cmo04g01766 486 PANTHER WRKY TRANSCRIPTION FACTOR 58-RELATED 20 485 - -
Cmo04g01766 486 SUPERFAMILY WRKY DNA-binding domain 370 438 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cmo04g01766 486 SUPERFAMILY WRKY DNA-binding domain 202 262 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cmo04g01766 486 MobiDBLite consensus disorder prediction 254 285 - -
Cmo04g01766 486 MobiDBLite consensus disorder prediction 465 486 - -
Cmo04g01766 486 ProSiteProfiles WRKY domain profile. 204 262 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo04g01766 486 ProSiteProfiles WRKY domain profile. 373 438 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo04g01766 486 MobiDBLite consensus disorder prediction 1 36 - -
Cmo04g01766 486 MobiDBLite consensus disorder prediction 457 486 - -
Cmo04g01766 486 MobiDBLite consensus disorder prediction 300 361 - -
Cmo04g01766 486 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 20 485 IPR044810 GO:0003700
Cmo04g01766 486 MobiDBLite consensus disorder prediction 267 285 - -
Cmo04g01766 486 MobiDBLite consensus disorder prediction 329 353 - -
Cmo04g01766 486 Gene3D WRKY domain 363 439 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cmo04g01766 486 Gene3D WRKY domain 190 263 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cmo04g01766 486 MobiDBLite consensus disorder prediction 8 28 - -
Cmo04g01766 486 SMART WRKY_cls 378 437 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo04g01766 486 SMART WRKY_cls 203 261 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01766 Cmo-Chr4:8911214 Cmo18g01145 Cmo-Chr18:11701929 0 dispersed
Cmo15g00258 Cmo-Chr15:1248796 Cmo04g01766 Cmo-Chr4:8911214 9.36E-140 wgd
Cmo04g01766 Cmo-Chr4:8911214 Cmo04g02919 Cmo-Chr4:20697081 2.29E-137 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9658 PF03106 WRKY 1.30E-25 CL0274 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g01766 - - cmo:103489160 737.258