Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo04g01767 | ATGGCGATGCCTGGATATCCAAGGGCTTTTGCAACACTAGGTTCTTGTTATCCACGGCATTCTCCGATCTCCCTTCAGCCTCCTAAGGTTGACCTCTCTGGTTTTGTTCATAGAAGATCTGGAAATAAAGGAATCAAGCCAAAATGGCGCACCATGGCACATGAAAATGATAGCATACATGGTATCTCCCAGCAAGATGTTGAGAGCTCAGCAGATTATGAACGATCACCAAGATCCTTAAGCCAAGAAAGCTTTATCCTCAGTTCCATGAAGATGAACTTCTTAGAACGATTAATATTGGCTTGGAGGATAATTTTTCCATCATCAACATCCAAATCGAACTCTAATGCTATGATTGCCAAGCAGCGGTTAAAGATGATTCTGTTGTCCGATCGATGTGCAGTTAATGATGAAACTAAACAAAAAATTGTGGACAGCATGTTGAGTTCTCTTTCGGATTTTGTAGAAATAGATTCAGAAGATAAAGTTCAATTTAATGTCTCTACTGATTCAGATCTCAGAACGATTTACTCTGTAACGGTGCCCGTGCGAAGGGTGAAGGCTGATTATCAAGGCAGTGAGGAAATTGGAGCAACCATAAATACAGAATTGAAGGATGATGGAGAGAGATCTGGCTCTGCAGGTCCCATTTTCGACGCATTAATTGCAGAAGGAAAAGTATTTGCTGTTCTTCGGACCATTAGCTATTTCATTTTCAACAGGGATACTCGCTCCCCTTTGTTGCCGTCCATCCTATATTCTTCGTTTTTCTCGTGCATATATAAATTCGCTTCTTTCCTCAACCCATTCCGTCGCACGTCTCTGAGCCTTTTTACTTTTCCGTCATCACCCTCTCCTCTTTGCACTCTTTCTCCCTACAGAGCCATGTCTGACGAGGAGCACCACTTCGAGTCGAAGGCCGACGCCGGAGCTTCCAAGACTTATCCTCAGCAGGCTGGAACCATCCGCAAGAATGGTTACATTGTCATCAAGGGCAGGCCTTGCAAGGTTGTTGAAGTTTCAACCTCTAAGACTGGAAAGCACGGACATGCTAAATGTCACTTTGTTGCCATTGACATTTTCACCTCTAAAAAGCTTGAAGATATCGTTCCTTCTTCTCACAACTGTGATGTTCCCCATGTCAGTCGCACTGATTATCAGCTCATTGATATCTCTGAGGATGGATTTATTAGCCTGCTGACGGACAGTGGTAACACCAAGGATGACCTGAGGCTTCCAAACGATGAGAGTCTGATGACCCAGATAAAGGATGGATTTGCTGAGGGGAAGGATCTGATTGTGACTGTCATGTCTTCAATGGGAGAGGAGCAAATCTGCGCTCTCAAGGACATCGGCCCAAAATAG | 1365 | 43.96 | MAMPGYPRAFATLGSCYPRHSPISLQPPKVDLSGFVHRRSGNKGIKPKWRTMAHENDSIHGISQQDVESSADYERSPRSLSQESFILSSMKMNFLERLILAWRIIFPSSTSKSNSNAMIAKQRLKMILLSDRCAVNDETKQKIVDSMLSSLSDFVEIDSEDKVQFNVSTDSDLRTIYSVTVPVRRVKADYQGSEEIGATINTELKDDGERSGSAGPIFDALIAEGKVFAVLRTISYFIFNRDTRSPLLPSILYSSFFSCIYKFASFLNPFRRTSLSLFTFPSSPSPLCTLSPYRAMSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTSKKLEDIVPSSHNCDVPHVSRTDYQLIDISEDGFISLLTDSGNTKDDLRLPNDESLMTQIKDGFAEGKDLIVTVMSSMGEEQICALKDIGPK | 454 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 8915488 | 8920742 | - | CmoCh04G017670.1 | Cmo04g01767 | 380742 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo04g01767 | 454 | PANTHER | BNAA07G09420D PROTEIN | 296 | 451 | - | - | |
Cmo04g01767 | 454 | Gene3D | - | 381 | 453 | IPR012340 | - | |
Cmo04g01767 | 454 | Pfam | Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold | 380 | 449 | IPR020189 | GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905 | |
Cmo04g01767 | 454 | Pfam | Septum formation topological specificity factor MinE | 118 | 184 | IPR005527 | GO:0032955|GO:0051301 | |
Cmo04g01767 | 454 | CDD | S1_eIF5A | 381 | 451 | - | - | |
Cmo04g01767 | 454 | Gene3D | - | 296 | 380 | IPR014722 | - | |
Cmo04g01767 | 454 | SUPERFAMILY | Nucleic acid-binding proteins | 381 | 451 | IPR012340 | - | |
Cmo04g01767 | 454 | SUPERFAMILY | Translation proteins SH3-like domain | 310 | 388 | IPR008991 | - | |
Cmo04g01767 | 454 | TIGRFAM | eIF_5A: translation elongation factor IF5A | 312 | 448 | IPR001884 | GO:0003723|GO:0003746|GO:0043022|GO:0045901 | |
Cmo04g01767 | 454 | PANTHER | TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER | 296 | 451 | IPR001884 | GO:0003723|GO:0003746|GO:0043022|GO:0045901 | |
Cmo04g01767 | 454 | ProSitePatterns | Eukaryotic initiation factor 5A hypusine signature. | 345 | 352 | IPR019769 | GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905 | |
Cmo04g01767 | 454 | SMART | eIF_5a_2 | 380 | 449 | IPR020189 | GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905 | |
Cmo04g01767 | 454 | Gene3D | Cell division topological specificity factor MinE | 104 | 183 | IPR036707 | GO:0032955|GO:0051301 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo01g01713 | Cmo-Chr1:12861126 | Cmo04g01767 | Cmo-Chr4:8915488 | 1.11E-107 | dispersed | |
Cmo04g01767 | Cmo-Chr4:8915488 | Cmo05g00354 | Cmo-Chr5:1586049 | 3.92E-105 | dispersed | |
Cmo18g01144 | Cmo-Chr18:11697801 | Cmo04g01767 | Cmo-Chr4:8915488 | 1.86E-111 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo04g01767 | K03263 | K02180 | csv:101222451 | 353.984 |