Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g01767 ATGGCGATGCCTGGATATCCAAGGGCTTTTGCAACACTAGGTTCTTGTTATCCACGGCATTCTCCGATCTCCCTTCAGCCTCCTAAGGTTGACCTCTCTGGTTTTGTTCATAGAAGATCTGGAAATAAAGGAATCAAGCCAAAATGGCGCACCATGGCACATGAAAATGATAGCATACATGGTATCTCCCAGCAAGATGTTGAGAGCTCAGCAGATTATGAACGATCACCAAGATCCTTAAGCCAAGAAAGCTTTATCCTCAGTTCCATGAAGATGAACTTCTTAGAACGATTAATATTGGCTTGGAGGATAATTTTTCCATCATCAACATCCAAATCGAACTCTAATGCTATGATTGCCAAGCAGCGGTTAAAGATGATTCTGTTGTCCGATCGATGTGCAGTTAATGATGAAACTAAACAAAAAATTGTGGACAGCATGTTGAGTTCTCTTTCGGATTTTGTAGAAATAGATTCAGAAGATAAAGTTCAATTTAATGTCTCTACTGATTCAGATCTCAGAACGATTTACTCTGTAACGGTGCCCGTGCGAAGGGTGAAGGCTGATTATCAAGGCAGTGAGGAAATTGGAGCAACCATAAATACAGAATTGAAGGATGATGGAGAGAGATCTGGCTCTGCAGGTCCCATTTTCGACGCATTAATTGCAGAAGGAAAAGTATTTGCTGTTCTTCGGACCATTAGCTATTTCATTTTCAACAGGGATACTCGCTCCCCTTTGTTGCCGTCCATCCTATATTCTTCGTTTTTCTCGTGCATATATAAATTCGCTTCTTTCCTCAACCCATTCCGTCGCACGTCTCTGAGCCTTTTTACTTTTCCGTCATCACCCTCTCCTCTTTGCACTCTTTCTCCCTACAGAGCCATGTCTGACGAGGAGCACCACTTCGAGTCGAAGGCCGACGCCGGAGCTTCCAAGACTTATCCTCAGCAGGCTGGAACCATCCGCAAGAATGGTTACATTGTCATCAAGGGCAGGCCTTGCAAGGTTGTTGAAGTTTCAACCTCTAAGACTGGAAAGCACGGACATGCTAAATGTCACTTTGTTGCCATTGACATTTTCACCTCTAAAAAGCTTGAAGATATCGTTCCTTCTTCTCACAACTGTGATGTTCCCCATGTCAGTCGCACTGATTATCAGCTCATTGATATCTCTGAGGATGGATTTATTAGCCTGCTGACGGACAGTGGTAACACCAAGGATGACCTGAGGCTTCCAAACGATGAGAGTCTGATGACCCAGATAAAGGATGGATTTGCTGAGGGGAAGGATCTGATTGTGACTGTCATGTCTTCAATGGGAGAGGAGCAAATCTGCGCTCTCAAGGACATCGGCCCAAAATAG 1365 43.96 MAMPGYPRAFATLGSCYPRHSPISLQPPKVDLSGFVHRRSGNKGIKPKWRTMAHENDSIHGISQQDVESSADYERSPRSLSQESFILSSMKMNFLERLILAWRIIFPSSTSKSNSNAMIAKQRLKMILLSDRCAVNDETKQKIVDSMLSSLSDFVEIDSEDKVQFNVSTDSDLRTIYSVTVPVRRVKADYQGSEEIGATINTELKDDGERSGSAGPIFDALIAEGKVFAVLRTISYFIFNRDTRSPLLPSILYSSFFSCIYKFASFLNPFRRTSLSLFTFPSSPSPLCTLSPYRAMSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTSKKLEDIVPSSHNCDVPHVSRTDYQLIDISEDGFISLLTDSGNTKDDLRLPNDESLMTQIKDGFAEGKDLIVTVMSSMGEEQICALKDIGPK 454
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8915488 8920742 - CmoCh04G017670.1 Cmo04g01767 380742
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g01767 454 PANTHER BNAA07G09420D PROTEIN 296 451 - -
Cmo04g01767 454 Gene3D - 381 453 IPR012340 -
Cmo04g01767 454 Pfam Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold 380 449 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Cmo04g01767 454 Pfam Septum formation topological specificity factor MinE 118 184 IPR005527 GO:0032955|GO:0051301
Cmo04g01767 454 CDD S1_eIF5A 381 451 - -
Cmo04g01767 454 Gene3D - 296 380 IPR014722 -
Cmo04g01767 454 SUPERFAMILY Nucleic acid-binding proteins 381 451 IPR012340 -
Cmo04g01767 454 SUPERFAMILY Translation proteins SH3-like domain 310 388 IPR008991 -
Cmo04g01767 454 TIGRFAM eIF_5A: translation elongation factor IF5A 312 448 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Cmo04g01767 454 PANTHER TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER 296 451 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Cmo04g01767 454 ProSitePatterns Eukaryotic initiation factor 5A hypusine signature. 345 352 IPR019769 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Cmo04g01767 454 SMART eIF_5a_2 380 449 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Cmo04g01767 454 Gene3D Cell division topological specificity factor MinE 104 183 IPR036707 GO:0032955|GO:0051301
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01713 Cmo-Chr1:12861126 Cmo04g01767 Cmo-Chr4:8915488 1.11E-107 dispersed
Cmo04g01767 Cmo-Chr4:8915488 Cmo05g00354 Cmo-Chr5:1586049 3.92E-105 dispersed
Cmo18g01144 Cmo-Chr18:11697801 Cmo04g01767 Cmo-Chr4:8915488 1.86E-111 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g01767 K03263 K02180 csv:101222451 353.984