Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g01772 ATGGCGTCCAAAGCTTTCCTCTTCGCTCTTTGCTTCATTTCATTCTCCTCTTCTATCTTAGCCGAATTTGTTAAAGTTTCTGTGAAAGGAGTGACCACCATTGCTGAAACCGACAATGATTTCATCTGTGCTACTCTGGATTGGTGGCCTTCTGATAAATGTGATTACGGCCAATGCCCCTGGGGAAAAGCTGGCCTTCTCAATTTGGATCTGCAGAACATTATCTTGTCTAAAGCAATCAAGGAGTTCAATCCTCTGAGAATCCGAGTTGGAGGGTCACTTCAAGATCAAATCATTTATAAAGTTGGGAACTCAGTCAAAAAGTGCCCTCAGATGAAGAAACAAGACGATGGTTTGTTCGGATTCAGCAAAGGTTGTTTCCACATGGAAAGATGGGATGAACTTAGCGATATGTTCAACAAAACCTCGGCTCGGATTACGTTTGGTTTGAACGCTCTAATCGGTAAAAAACCATCCAATGATGGAAAAGGCACATGGGTTGGTGATTGGGATCCACGTAATGCTCGAGATTTCATTCGATACACTGCCTCTAAAGGCTACCAAATCGATTCTTATGAACTGGGAAATGAGCTTTCTGGTAGTGGGGTTTCTGCAAGGCTTGAGGCTGATCAATACGCCAAGGATCTTACTCTCATGAGACAGGTAGTGGAAGAAGTTTATCCTGATGCCAACAACAGACCCAAAATTCTGGGCCCTGCTGGGTTCTTTGACAGAGAATGGTTCAAGACCTTCCTTCAAAACACTGAACCCAACGCTGTTGATGGAGTCACCCACCATATTTACAATCTTGGTCCAGGGGTTGATCCTGAGCTTATCTATAAGGTTCGAGACCCTTATGTTTTGGATCAAATTGCTCAAACTTTCAAGGAAGCTGCGGACGTTTCAGCCAGCTTTGGGCCGTGGTCTAAGCCTTGGATTGGTGAATCTGGTGGCGCTTACAACAGTGGTGGCAGAACTGTTTCTCATACCTTTGCTGATGGCTTCTGGTACTTGGATCAATTGGGGATGACGGCCACGTTCAATCATCATGTTTATTGTAGACAAGCTTTGATCGGTGGAAACTATGGCCTGCTTAATACCACTTCGTTCATCCCTAATCCAGATTATTACAGCGCACTTCTATGGCACAGACTAATGGGAACGAAGGTCCTGTCGGCGTCCCACGACAGCTCTCCATATCTTCGTGTCTATTCTCACTGCACCAAGAACAACGACGGCGTGACAGTGCTTCTAATCAACATGTCGAACTCGACGAGCTATGATGTGAAGATTGTGAGCGAAAGAAGGCTTTATCCCAACGCCATGGGCGGGCGATTACAGGCAAGAGAAGAGTACCACTTGAGTCCCAAAGACGGCGATATTCAAAGCGACGTGATGCTCCTCAACGGATCTCCTCTGCAGCTGACACCCAAGTTGGACATTCCCGGCATGTCGCCCAAGCTGGTGGATCCCACTTCTGCCGTGTCAGTCGCCCCTAATTCCTACGTCTTTGTCACCATTAAAGACTTCAAAGCAGCTGCTTGCGCCTGA 1551 46.49 MASKAFLFALCFISFSSSILAEFVKVSVKGVTTIAETDNDFICATLDWWPSDKCDYGQCPWGKAGLLNLDLQNIILSKAIKEFNPLRIRVGGSLQDQIIYKVGNSVKKCPQMKKQDDGLFGFSKGCFHMERWDELSDMFNKTSARITFGLNALIGKKPSNDGKGTWVGDWDPRNARDFIRYTASKGYQIDSYELGNELSGSGVSARLEADQYAKDLTLMRQVVEEVYPDANNRPKILGPAGFFDREWFKTFLQNTEPNAVDGVTHHIYNLGPGVDPELIYKVRDPYVLDQIAQTFKEAADVSASFGPWSKPWIGESGGAYNSGGRTVSHTFADGFWYLDQLGMTATFNHHVYCRQALIGGNYGLLNTTSFIPNPDYYSALLWHRLMGTKVLSASHDSSPYLRVYSHCTKNNDGVTVLLINMSNSTSYDVKIVSERRLYPNAMGGRLQAREEYHLSPKDGDIQSDVMLLNGSPLQLTPKLDIPGMSPKLVDPTSAVSVAPNSYVFVTIKDFKAAACA 516
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8939870 8942782 - CmoCh04G017720.1 Cmo04g01772 380747

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g01772 516 PANTHER OS07G0598400 PROTEIN 18 516 - -
Cmo04g01772 516 PANTHER HEPARANASE-RELATED 18 516 - -
Cmo04g01772 516 SUPERFAMILY (Trans)glycosidases 37 386 IPR017853 -
Cmo04g01772 516 Pfam Glycosyl hydrolase family 79, N-terminal domain 24 342 IPR005199 GO:0016020|GO:0016798
Cmo04g01772 516 Gene3D Glycosidases 64 384 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g01772 K07964 HPSE; heparanase [EC:3.2.1.166] - csv:101214214 879.782
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01772 Cmo-Chr4:8939870 Cmo12g01209 Cmo-Chr12:10817985 5.68E-173 dispersed
Cmo01g00855 Cmo-Chr1:4548104 Cmo04g01772 Cmo-Chr4:8939870 0 wgd
Cmo11g00196 Cmo-Chr11:958821 Cmo04g01772 Cmo-Chr4:8939870 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g70 . . . . . Bpe10g00894 . Bma15g00136 Cmo04g01772 . . . . . Sed07g1998 . Cpe01g01496 Bhi07g01513 Tan04g1024 Cmetu10g0886 Lac13g0362 Hepe10g1783 . . Cla05g02405 Cam05g2582 Cec05g2614 Cco05g2654 Clacu05g2584 Cmu05g2438 Cre05g2555 . . . . Lsi04g00375 Csa05g02498 Chy10g01047 Cme10g00373 Blo06g00925 . . . . . . . . . . Cma04g01691 . Car04g01727 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005423 2 1 1 2 2 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 2 1 1 7 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo04g01772 Cmo_Chr04 FPKM 8.778161 8.233677 24.586548 23.088581 10.199977 10.493944 11.450692 17.265575 15.918939 17.392681