Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g01772 ATGGCGTCCAAAGCTTTCCTCTTCGCTCTTTGCTTCATTTCATTCTCCTCTTCTATCTTAGCCGAATTTGTTAAAGTTTCTGTGAAAGGAGTGACCACCATTGCTGAAACCGACAATGATTTCATCTGTGCTACTCTGGATTGGTGGCCTTCTGATAAATGTGATTACGGCCAATGCCCCTGGGGAAAAGCTGGCCTTCTCAATTTGGATCTGCAGAACATTATCTTGTCTAAAGCAATCAAGGAGTTCAATCCTCTGAGAATCCGAGTTGGAGGGTCACTTCAAGATCAAATCATTTATAAAGTTGGGAACTCAGTCAAAAAGTGCCCTCAGATGAAGAAACAAGACGATGGTTTGTTCGGATTCAGCAAAGGTTGTTTCCACATGGAAAGATGGGATGAACTTAGCGATATGTTCAACAAAACCTCGGCTCGGATTACGTTTGGTTTGAACGCTCTAATCGGTAAAAAACCATCCAATGATGGAAAAGGCACATGGGTTGGTGATTGGGATCCACGTAATGCTCGAGATTTCATTCGATACACTGCCTCTAAAGGCTACCAAATCGATTCTTATGAACTGGGAAATGAGCTTTCTGGTAGTGGGGTTTCTGCAAGGCTTGAGGCTGATCAATACGCCAAGGATCTTACTCTCATGAGACAGGTAGTGGAAGAAGTTTATCCTGATGCCAACAACAGACCCAAAATTCTGGGCCCTGCTGGGTTCTTTGACAGAGAATGGTTCAAGACCTTCCTTCAAAACACTGAACCCAACGCTGTTGATGGAGTCACCCACCATATTTACAATCTTGGTCCAGGGGTTGATCCTGAGCTTATCTATAAGGTTCGAGACCCTTATGTTTTGGATCAAATTGCTCAAACTTTCAAGGAAGCTGCGGACGTTTCAGCCAGCTTTGGGCCGTGGTCTAAGCCTTGGATTGGTGAATCTGGTGGCGCTTACAACAGTGGTGGCAGAACTGTTTCTCATACCTTTGCTGATGGCTTCTGGTACTTGGATCAATTGGGGATGACGGCCACGTTCAATCATCATGTTTATTGTAGACAAGCTTTGATCGGTGGAAACTATGGCCTGCTTAATACCACTTCGTTCATCCCTAATCCAGATTATTACAGCGCACTTCTATGGCACAGACTAATGGGAACGAAGGTCCTGTCGGCGTCCCACGACAGCTCTCCATATCTTCGTGTCTATTCTCACTGCACCAAGAACAACGACGGCGTGACAGTGCTTCTAATCAACATGTCGAACTCGACGAGCTATGATGTGAAGATTGTGAGCGAAAGAAGGCTTTATCCCAACGCCATGGGCGGGCGATTACAGGCAAGAGAAGAGTACCACTTGAGTCCCAAAGACGGCGATATTCAAAGCGACGTGATGCTCCTCAACGGATCTCCTCTGCAGCTGACACCCAAGTTGGACATTCCCGGCATGTCGCCCAAGCTGGTGGATCCCACTTCTGCCGTGTCAGTCGCCCCTAATTCCTACGTCTTTGTCACCATTAAAGACTTCAAAGCAGCTGCTTGCGCCTGA 1551 46.49 MASKAFLFALCFISFSSSILAEFVKVSVKGVTTIAETDNDFICATLDWWPSDKCDYGQCPWGKAGLLNLDLQNIILSKAIKEFNPLRIRVGGSLQDQIIYKVGNSVKKCPQMKKQDDGLFGFSKGCFHMERWDELSDMFNKTSARITFGLNALIGKKPSNDGKGTWVGDWDPRNARDFIRYTASKGYQIDSYELGNELSGSGVSARLEADQYAKDLTLMRQVVEEVYPDANNRPKILGPAGFFDREWFKTFLQNTEPNAVDGVTHHIYNLGPGVDPELIYKVRDPYVLDQIAQTFKEAADVSASFGPWSKPWIGESGGAYNSGGRTVSHTFADGFWYLDQLGMTATFNHHVYCRQALIGGNYGLLNTTSFIPNPDYYSALLWHRLMGTKVLSASHDSSPYLRVYSHCTKNNDGVTVLLINMSNSTSYDVKIVSERRLYPNAMGGRLQAREEYHLSPKDGDIQSDVMLLNGSPLQLTPKLDIPGMSPKLVDPTSAVSVAPNSYVFVTIKDFKAAACA 516
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8939870 8942782 - CmoCh04G017720.1 Cmo04g01772 380747
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g01772 516 PANTHER OS07G0598400 PROTEIN 18 516 - -
Cmo04g01772 516 PANTHER HEPARANASE-RELATED 18 516 - -
Cmo04g01772 516 SUPERFAMILY (Trans)glycosidases 37 386 IPR017853 -
Cmo04g01772 516 Pfam Glycosyl hydrolase family 79, N-terminal domain 24 342 IPR005199 GO:0016020|GO:0016798
Cmo04g01772 516 Gene3D Glycosidases 64 384 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01772 Cmo-Chr4:8939870 Cmo12g01209 Cmo-Chr12:10817985 5.68E-173 dispersed
Cmo01g00855 Cmo-Chr1:4548104 Cmo04g01772 Cmo-Chr4:8939870 0 wgd
Cmo11g00196 Cmo-Chr11:958821 Cmo04g01772 Cmo-Chr4:8939870 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g01772 K07964 - csv:101214214 879.782