Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g01776 ATGTTTAGTTTCATGAAATCCCCCGCGAAAGTTACTAAGCAGAATTCTGTAGATGAATTATCAGGCGGATCTGGCACTAATCCTTTTGATTCTGATTCTGGGCCTGAAGCCAAACAAACTCTTAATGCTGCAAGAAGAACTTCTTCTGAGCCTGTGCTCATTATACCAAACTCCATTTCCGCCAACGATTTTGATGATGATGATGATGATGGTTTTGTTGGAAAAAGAAGGACTGCAACTTCTGCAGCCTCTAAAGACAGGTACAAAAATGATTTTCGTGACTCGGGAGGACTCGAGAACCAAAGTGTGCAGGAATTGGAGAATTATGCTGTGTATAAAGCAGAGGAGACCACAAAATCTGTTCACAATTGCTTGAAGATTGCTGAGGACATAAGGGAAGATGCTACCAAGACCCTTGACATGTTGCATCAGCAGGGTGAGCAAATTGAGAGGACCCACAGGATGGCTGCTGATATGGATAAAGATTTAAGTAAGGGTGAGAAACTTCTGAATAATCTGGGAGGCATGTTCTCTAAGCCATGGAAGCCAAAGAAGACCAAAGAAATTACAGGCCCTCTTATAACAGCAGATCATTCCTCTGGGCGAACTGAAAACAACAAGGAGCAAAGGGAAAAACTCGGTGTATCTACGGGCAAAAAACAGTCGGGGACTAAAACACCGCCCTCTGAACCAACAGGTGCAATACAAAAAGTTGAGGCTCAGAAGGAAATGCAAGATGATGCACTCTCAGATTTAAGTGATATCTTGGGTGATCTGAAGAGTATGGCTGTGGACATGGGAAGCGAGCTTGACAGGCAAAACAAAGCTCTTGATCATCTAAGCGACGATGTCGACGAGCTGAATTCTAGAGTGAAGGGCGCCAATCAGCGGGCTCGTCATTTGGTTGGGAAGTAA 915 44.04 MFSFMKSPAKVTKQNSVDELSGGSGTNPFDSDSGPEAKQTLNAARRTSSEPVLIIPNSISANDFDDDDDDGFVGKRRTATSAASKDRYKNDFRDSGGLENQSVQELENYAVYKAEETTKSVHNCLKIAEDIREDATKTLDMLHQQGEQIERTHRMAADMDKDLSKGEKLLNNLGGMFSKPWKPKKTKEITGPLITADHSSGRTENNKEQREKLGVSTGKKQSGTKTPPSEPTGAIQKVEAQKEMQDDALSDLSDILGDLKSMAVDMGSELDRQNKALDHLSDDVDELNSRVKGANQRARHLVGK 304
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8950322 8952826 - CmoCh04G017760.1 Cmo04g01776 380751

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g01776 304 MobiDBLite consensus disorder prediction 1 99 - -
Cmo04g01776 304 MobiDBLite consensus disorder prediction 8 56 - -
Cmo04g01776 304 Gene3D - 236 303 - -
Cmo04g01776 304 MobiDBLite consensus disorder prediction 216 231 - -
Cmo04g01776 304 Gene3D - 97 175 - -
Cmo04g01776 304 Coils Coil 270 297 - -
Cmo04g01776 304 SUPERFAMILY SNARE fusion complex 234 301 - -
Cmo04g01776 304 CDD SNARE_SNAP25N_23N_29N_SEC9N 108 172 IPR044766 GO:0005484|GO:0031201
Cmo04g01776 304 SMART tSNARE_6 234 301 IPR000727 -
Cmo04g01776 304 SMART tSNARE_6 106 173 IPR000727 -
Cmo04g01776 304 MobiDBLite consensus disorder prediction 174 234 - -
Cmo04g01776 304 SUPERFAMILY SNARE fusion complex 101 172 - -
Cmo04g01776 304 MobiDBLite consensus disorder prediction 69 94 - -
Cmo04g01776 304 PANTHER SYNAPTOSOMAL ASSOCIATED PROTEIN 1 304 - -
Cmo04g01776 304 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 239 301 IPR000727 -
Cmo04g01776 304 CDD SNARE_Qc 242 300 - -
Cmo04g01776 304 MobiDBLite consensus disorder prediction 201 215 - -
Cmo04g01776 304 Coils Coil 125 145 - -
Cmo04g01776 304 PANTHER SNAP25 HOMOLOGOUS PROTEIN SNAP30-RELATED 1 304 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g01776 K18211 SNAP25; synaptosomal-associated protein 25 - csv:101213250 538.11
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00857 Cmo-Chr1:4552532 Cmo04g01776 Cmo-Chr4:8950322 4.80E-108 wgd
Cmo10g00232 Cmo-Chr10:1040713 Cmo04g01776 Cmo-Chr4:8950322 2.81E-102 wgd
Cmo11g00198 Cmo-Chr11:969638 Cmo04g01776 Cmo-Chr4:8950322 7.21E-83 wgd
Cmo13g01138 Cmo-Chr13:9226740 Cmo04g01776 Cmo-Chr4:8950322 1.57E-111 wgd
Cmo18g01136 Cmo-Chr18:11656051 Cmo04g01776 Cmo-Chr4:8950322 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g56 . . . . . Bpe10g00897 Bma14g01662 . Cmo04g01776 . . . . . . Cpe09g00936 Cpe01g01498 . . . . . . . . . . . . . . . . . . . . Chy10g01049 . . Blo11g00791 . . . . . . . . . Cma04g01693 . Car04g01730 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005869 2 2 1 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo04g01776 Cmo_Chr04 FPKM 3.155233 2.425723 9.510045 9.009402 14.5776 16.152039 15.386034 11.486552 12.024223 12.54523