Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cmo04g01776 | ATGTTTAGTTTCATGAAATCCCCCGCGAAAGTTACTAAGCAGAATTCTGTAGATGAATTATCAGGCGGATCTGGCACTAATCCTTTTGATTCTGATTCTGGGCCTGAAGCCAAACAAACTCTTAATGCTGCAAGAAGAACTTCTTCTGAGCCTGTGCTCATTATACCAAACTCCATTTCCGCCAACGATTTTGATGATGATGATGATGATGGTTTTGTTGGAAAAAGAAGGACTGCAACTTCTGCAGCCTCTAAAGACAGGTACAAAAATGATTTTCGTGACTCGGGAGGACTCGAGAACCAAAGTGTGCAGGAATTGGAGAATTATGCTGTGTATAAAGCAGAGGAGACCACAAAATCTGTTCACAATTGCTTGAAGATTGCTGAGGACATAAGGGAAGATGCTACCAAGACCCTTGACATGTTGCATCAGCAGGGTGAGCAAATTGAGAGGACCCACAGGATGGCTGCTGATATGGATAAAGATTTAAGTAAGGGTGAGAAACTTCTGAATAATCTGGGAGGCATGTTCTCTAAGCCATGGAAGCCAAAGAAGACCAAAGAAATTACAGGCCCTCTTATAACAGCAGATCATTCCTCTGGGCGAACTGAAAACAACAAGGAGCAAAGGGAAAAACTCGGTGTATCTACGGGCAAAAAACAGTCGGGGACTAAAACACCGCCCTCTGAACCAACAGGTGCAATACAAAAAGTTGAGGCTCAGAAGGAAATGCAAGATGATGCACTCTCAGATTTAAGTGATATCTTGGGTGATCTGAAGAGTATGGCTGTGGACATGGGAAGCGAGCTTGACAGGCAAAACAAAGCTCTTGATCATCTAAGCGACGATGTCGACGAGCTGAATTCTAGAGTGAAGGGCGCCAATCAGCGGGCTCGTCATTTGGTTGGGAAGTAA | 915 | 44.04 | MFSFMKSPAKVTKQNSVDELSGGSGTNPFDSDSGPEAKQTLNAARRTSSEPVLIIPNSISANDFDDDDDDGFVGKRRTATSAASKDRYKNDFRDSGGLENQSVQELENYAVYKAEETTKSVHNCLKIAEDIREDATKTLDMLHQQGEQIERTHRMAADMDKDLSKGEKLLNNLGGMFSKPWKPKKTKEITGPLITADHSSGRTENNKEQREKLGVSTGKKQSGTKTPPSEPTGAIQKVEAQKEMQDDALSDLSDILGDLKSMAVDMGSELDRQNKALDHLSDDVDELNSRVKGANQRARHLVGK | 304 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 8950322 | 8952826 | - | CmoCh04G017760.1 | Cmo04g01776 | 380751 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cmo04g01776 | 304 | MobiDBLite | consensus disorder prediction | 1 | 99 | - | - | |
| Cmo04g01776 | 304 | MobiDBLite | consensus disorder prediction | 8 | 56 | - | - | |
| Cmo04g01776 | 304 | Gene3D | - | 236 | 303 | - | - | |
| Cmo04g01776 | 304 | MobiDBLite | consensus disorder prediction | 216 | 231 | - | - | |
| Cmo04g01776 | 304 | Gene3D | - | 97 | 175 | - | - | |
| Cmo04g01776 | 304 | Coils | Coil | 270 | 297 | - | - | |
| Cmo04g01776 | 304 | SUPERFAMILY | SNARE fusion complex | 234 | 301 | - | - | |
| Cmo04g01776 | 304 | CDD | SNARE_SNAP25N_23N_29N_SEC9N | 108 | 172 | IPR044766 | GO:0005484|GO:0031201 | |
| Cmo04g01776 | 304 | SMART | tSNARE_6 | 234 | 301 | IPR000727 | - | |
| Cmo04g01776 | 304 | SMART | tSNARE_6 | 106 | 173 | IPR000727 | - | |
| Cmo04g01776 | 304 | MobiDBLite | consensus disorder prediction | 174 | 234 | - | - | |
| Cmo04g01776 | 304 | SUPERFAMILY | SNARE fusion complex | 101 | 172 | - | - | |
| Cmo04g01776 | 304 | MobiDBLite | consensus disorder prediction | 69 | 94 | - | - | |
| Cmo04g01776 | 304 | PANTHER | SYNAPTOSOMAL ASSOCIATED PROTEIN | 1 | 304 | - | - | |
| Cmo04g01776 | 304 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 239 | 301 | IPR000727 | - | |
| Cmo04g01776 | 304 | CDD | SNARE_Qc | 242 | 300 | - | - | |
| Cmo04g01776 | 304 | MobiDBLite | consensus disorder prediction | 201 | 215 | - | - | |
| Cmo04g01776 | 304 | Coils | Coil | 125 | 145 | - | - | |
| Cmo04g01776 | 304 | PANTHER | SNAP25 HOMOLOGOUS PROTEIN SNAP30-RELATED | 1 | 304 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cmo01g00857 | Cmo-Chr1:4552532 | Cmo04g01776 | Cmo-Chr4:8950322 | 4.80E-108 | wgd | |
| Cmo10g00232 | Cmo-Chr10:1040713 | Cmo04g01776 | Cmo-Chr4:8950322 | 2.81E-102 | wgd | |
| Cmo11g00198 | Cmo-Chr11:969638 | Cmo04g01776 | Cmo-Chr4:8950322 | 7.21E-83 | wgd | |
| Cmo13g01138 | Cmo-Chr13:9226740 | Cmo04g01776 | Cmo-Chr4:8950322 | 1.57E-111 | wgd | |
| Cmo18g01136 | Cmo-Chr18:11656051 | Cmo04g01776 | Cmo-Chr4:8950322 | 0 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cmo04g01776 | K18211 | - | csv:101213250 | 538.11 |