Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g01788 ATGATAGCTTCTGGTGGCTGCTCTGTGTTGTCATTCCATTCTATGGAGGTCAGCTTCTCGCATGTCAGCATGTTGCTTATGTTCACAGTGGCTGTTGCGGTCCTCATGGCTTCATCAGGACATAGACATTGGAAAATCATTAGGGAAAGCTTGTTAAATCTCCATGGCTTTCGAGGATTTTTGTCGTCGGTGTCGCTTCCGGCGAGATTTAGCGGCAGTGAACAGCATATTGCAAGCCATATAGTCTCTAATTATATAGCTATTGAATTGTCTAAAGGAGCAAAAGCTGCATTCATGGATCTATTGGTGGAAGTGGGAGAAAGCTTGAAACTATTGAAGAAGGCGAGAACAATAGAATATATGGCAGCGACGGGTAGATGTGAAGATACCGCTGGGGAAGGATTAGGCAGTACACATTCTGAAGATACTGCTGGGGAAGGATTTTCACTTTCCCCAACAGAGCAGCTGGCGTATGGGTCTTCATCATGTATAAACTTGTTGGAATTATCAGATCTCGTTCAAGTTGGCGAAAATGTTAACCGACCCGAAGCAGGCACAATTTTCTTGGGAAATCCCGATCATGATGTTTACCAGCTTCAATTTAAAGATGATGAGAGCGATGTTTCCAGCATTTGTTCTGCCAAATCAGAGAAGAGTAGCGGTTCTCAAGGTCCCACATCTGCATCTCAAGTTTATGATATTACCCATGAGTCTGGTGGAAATGCTATGTCTCCAACCCAATCCCCTCCTCTTCAGACAATGGATCGTGTGGGAGGATATGAATCATATGATCCGTCAAGAATTCCGTCTGCAGTTTTCCAAAGAAGTAGATCAACCACTCCATTGGAATGGAGTATTGCTTCAAATGAGTCCTTGTTTAGCATTCATGGTGGAGATGATAGTTTCTCCGGAGATAATTTGTCGATGTTGAGTGATTTAGGGAAGTCAGACGAGTTGCTTGTGTTTAACTCACCACCTGAAGTTATCACGTCAAGAGAAACTGAAATGAAGAGTGTCGAATACGAAGAGGAGCCTAAAGTGGCAGATAGCACAGAATATAACATTGAGGATAAAGAGGGTTTGGTTGCAGAAGATCTAAGTGGAAGAAACGTACTGCCTCCTGCATTATCATCGAATTCCTCTAGCAGATCTCGCCACTCTGAAAGAAGTCAATGCAGCTCAAATTCCTTCGCTTTCCCCATTTTGGCCGATGAGGTGGCTCAGGATGGATCTTCTCTACAAAATCTAATGCAAACTCTTGGTTTCCCTGCTGTTCATGTTCTTGTTACAAATGGAATTGCTATTCACGTTCTTGTTGCAAATGGACTTGCTGTTCATGTTCGTCTTGTTGCACATGGAACTGCTATAGTTGTAATTTTCGTCCTCACTGTCATTTTTGTCCTCGATGCCGTATTTTCTACCCTTGCCATTTTTGTCGTGGTTAAGTGGACAATGTCGCAGAAAAGACAA 1470 43.06 MIASGGCSVLSFHSMEVSFSHVSMLLMFTVAVAVLMASSGHRHWKIIRESLLNLHGFRGFLSSVSLPARFSGSEQHIASHIVSNYIAIELSKGAKAAFMDLLVEVGESLKLLKKARTIEYMAATGRCEDTAGEGLGSTHSEDTAGEGFSLSPTEQLAYGSSSCINLLELSDLVQVGENVNRPEAGTIFLGNPDHDVYQLQFKDDESDVSSICSAKSEKSSGSQGPTSASQVYDITHESGGNAMSPTQSPPLQTMDRVGGYESYDPSRIPSAVFQRSRSTTPLEWSIASNESLFSIHGGDDSFSGDNLSMLSDLGKSDELLVFNSPPEVITSRETEMKSVEYEEEPKVADSTEYNIEDKEGLVAEDLSGRNVLPPALSSNSSSRSRHSERSQCSSNSFAFPILADEVAQDGSSLQNLMQTLGFPAVHVLVTNGIAIHVLVANGLAVHVRLVAHGTAIVVIFVLTVIFVLDAVFSTLAIFVVVKWTMSQKRQ 490
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8988809 8992379 + CmoCh04G017880.1 Cmo04g01788 380763

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g01788 490 PANTHER - 134 411 - -
Cmo04g01788 490 MobiDBLite consensus disorder prediction 131 151 - -
Cmo04g01788 490 PANTHER SUPPRESSOR SRP40-LIKE PROTEIN 134 411 - -
Cmo04g01788 490 MobiDBLite consensus disorder prediction 210 229 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g01788 - - - cmos:111458373 550.821
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo04g01788 Cmo18g01125 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01788 Cmo-Chr4:8988809 Cmo10g00317 Cmo-Chr10:1421901 4.99E-14 dispersed
Cmo15g00242 Cmo-Chr15:1196815 Cmo04g01788 Cmo-Chr4:8988809 1.97E-11 wgd
Cmo18g01125 Cmo-Chr18:11605507 Cmo04g01788 Cmo-Chr4:8988809 1.54E-07 wgd
Cmo04g01788 Cmo-Chr4:8988809 Cmo04g02932 Cmo-Chr4:20770420 5.81E-12 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g35 . . . . . Bpe10g00899 . Bma15g00132 Cmo04g01788 Cmo18g01125 . Cma18g01104 . Car18g01018 . Cpe09g00222 Cpe01g01506 Bhi07g01487 . . . . . . Cla05g02391 Cam05g2568 Cec05g2601 . . . Cre05g2539 . . . . . Csa05g02515 Chy10g01059 Cme10g00356 Blo06g00927 . . . . . . . . . . Cma04g01703 . Car04g01738 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009041 1 3 1 1 1 1 2 0 1 1 1 0 2 1 1 2 0 0 2 1 1 1 1 1 1 0 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo04g01788 Cmo_Chr04 FPKM 5.108484 6.400826 8.309591 9.165535 10.502647 7.849882 9.678692 10.537507 9.795406 9.890609