Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cmo04g01789 | ATGGGGGAAGCCAACGAAGGAGGAAGTAGAGGAATGGAGAAGGTTCCTCTGCAAACTGAGAAGTACCCAACAGATCTGTTGCAGAGATTTTTGTGTAGAAATTCACATCAGCCCCAAATTGGGGCGTTTAATGAAGAGGGTGATGCAGAGGAGATTGAGCTGAATCTTGGGCTTTCACTTGGGGGTCGATTTGGGGTTGACAAGAATTCCAAGATGCTTGTTCGGTCGTCGTCGATTGCTGGGACGATGCGTTTGAGGGACGATGAGGCATCGACTCCAACGGCGGTATCGTACCCGGGGCTTATTCGGACGTCGTCTCTTCCGCCAGAGACGGAAGAGGAGTGGAGGAAGAGGAAGGAATTGCAGACGTTGAGGCGAATGGAGGCGAAGAGGAGGAGGTTTGAGAAGCAGAGGAATAAGGATGGAATTGGGATGGGGAGTGGTGGGTGTTTTGAAGAAGAGAGGCGTGAAATTGGAGGCCTTGCTGGATTGAATTTGAGAGAGAAAAGGGTTGGTTCGGGTGTTTTGACAACAGTGTCGCCGCCGTTCGGGTCGACAACGTGGCCGGCGGGTGCTCGACAGGCTGTTATCGGCGGAATTGTGGATGAAGTTGTCAAAGGGAAAGGTGGTTGTACATCGGGCGGTGGCGGCGGCAGCAGAGGTTTACCGGGGCTCGGACAGCCTGGTTCTCAGTGCTCCGCCGAATCACAGGGTGGAAGCTCGTCGGGGATGTCGGAATTGGACAGCAAACACATCCAAGGATCAAGCAGCTACGGCGAAGCAAGAAGCTCCTCGCAAGAGCAAGGCAACCAAGAGGCTGGAGGTTCTTCAGGATCGAAGACGTGTGAGAATCCATCAGGCAGTTCCAAAGTAGAGACGAAAAAGAAGCCCGATTTGGGCGAGAACAGGGGGAGAGAAACGGGGACGTCGTCGATGGAAGACATGCCTTGTGTGTTCACAGTAGGGGATGGGCCTGATGGGAGAAGGGTGGAAGGGATTCTTTACAAGTATGGGAAAGGGGAGGAAGTGAGGATAATGTGTGTATGCCATGGGAAGTTCCTGTCGCCAGCAGAGTTTGTGAAGCATGCTGGTGGGAAAAATGTGGCTCACCCACTAAGACATATAGTTGTCAATCCCAATTCTGGTTCCTTTTCGTGA | 1158 | 52.68 | MGEANEGGSRGMEKVPLQTEKYPTDLLQRFLCRNSHQPQIGAFNEEGDAEEIELNLGLSLGGRFGVDKNSKMLVRSSSIAGTMRLRDDEASTPTAVSYPGLIRTSSLPPETEEEWRKRKELQTLRRMEAKRRRFEKQRNKDGIGMGSGGCFEEERREIGGLAGLNLREKRVGSGVLTTVSPPFGSTTWPAGARQAVIGGIVDEVVKGKGGCTSGGGGGSRGLPGLGQPGSQCSAESQGGSSSGMSELDSKHIQGSSSYGEARSSSQEQGNQEAGGSSGSKTCENPSGSSKVETKKKPDLGENRGRETGTSSMEDMPCVFTVGDGPDGRRVEGILYKYGKGEEVRIMCVCHGKFLSPAEFVKHAGGKNVAHPLRHIVVNPNSGSFS | 385 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 8992727 | 8995696 | - | CmoCh04G017890.1 | Cmo04g01789 | 380764 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cmo04g01789 | 385 | Pfam | Putative nuclear localisation signal | 101 | 249 | IPR032310 | - | |
| Cmo04g01789 | 385 | MobiDBLite | consensus disorder prediction | 212 | 316 | - | - | |
| Cmo04g01789 | 385 | Pfam | Ethylene-responsive binding factor-associated repression | 48 | 81 | IPR012463 | - | |
| Cmo04g01789 | 385 | MobiDBLite | consensus disorder prediction | 229 | 288 | - | - | |
| Cmo04g01789 | 385 | PANTHER | NINJA-FAMILY PROTEIN AFP1 | 19 | 381 | - | - | |
| Cmo04g01789 | 385 | MobiDBLite | consensus disorder prediction | 289 | 303 | - | - | |
| Cmo04g01789 | 385 | MobiDBLite | consensus disorder prediction | 87 | 113 | - | - | |
| Cmo04g01789 | 385 | PANTHER | AFP HOMOLOG 2 | 19 | 381 | IPR031307 | GO:0007165 | |
| Cmo04g01789 | 385 | Coils | Coil | 117 | 137 | - | - | |
| Cmo04g01789 | 385 | Pfam | Tify domain binding domain | 343 | 377 | IPR032308 | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cmo04g01789 | Cmo18g01124 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cmo04g01789 | Cmo-Chr4:8992727 | Cmo19g00191 | Cmo-Chr19:1230598 | 2.41E-18 | dispersed | |
| Cmo13g01118 | Cmo-Chr13:9123617 | Cmo04g01789 | Cmo-Chr4:8992727 | 6.71E-28 | wgd | |
| Cmo18g01124 | Cmo-Chr18:11602435 | Cmo04g01789 | Cmo-Chr4:8992727 | 3.11E-178 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cmo04g01789 | - | - | csv:101220339 | 596.275 |