Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g01790 ATGTGTGGAATCGCTTTGGTCGTTTCTGGCTGTCGCCTTGATTTATCGTCTCTACATGTAGACGCCAGAGCTCCGTCTCCTCATCCAGTGCACGAGCATCTCGAGTTTTCGATAGATGATCTTAAAGCGGCATTGCGGAGAAGGGGCCCCGATAGCTTAGGCGAAGTGAAGGTTTTTATTTCCTCAATATGTTCCAATCCTGGTGAAGAGCAGCAGTTTGAGTGTTTCGTTGAGAGGGTTGATTGTGGAGTTGCATTTCAGAATCAAAATGATCAACACGAGATGGCAAATGGAAGGATTCTCCAATCACATGCCAGTTGTAGTAGTCCCATCTCTGGTGCGCAGTTTTGTTTTCTGGGCGCTACATTACAGCTTAGAGGGCTTAACCCTATTGTTCAGCCACTGATGGATGCTTCCCGCAATGTTCTTGTTTACAATGGTGAAATATTTGGAGGAATACACGTTGAGTATCATCAAAATGATGCTGAAGCTCTTATGCAAGCTCTTGGGAATTGTTGCGCAAGTAATGTTAGTTTAGATACGAACACATGTGTAGGGGAATGTAAGAGAGAAAGCACTATTGTAGACGTTCTTTCAAACATTCAAGGGCCATGGGCAATTATCTACTTCGCGGATAGTGCAAAAACTTTGTGGTTTGGTAGGGATGCCTTTGGTAGGCGAAGTCTTCTTGTTCACTGGCCAACCGTGGAGGATTCTCGGTTTCTTTTGTCTTCTGTATCACCAGCTTCCTCCATGTTTCACGACTCTGGACATGACAATGATAATGGTACTTGTGAAGTGAGCTTCTGGGAAGAACTTCCATGTGGGATTTACAGCATCTCTTTTGATGCTCGGAGCACGGACGGTTGCCTGGTTGGTGAAGTCAAAAGGCATGAATGGACCAATGAGTCACTGAAAGAACTTATCGAGTGGAAGAGAACTTGTATTGTACCTAAACCCGGAGACATCTCCTCTTCATATCACGAGGATCTTTTGTCACAGCATGAAAGTAATTCAGCATGTTTGCATAACTTGCAATCAGTATCAGAGGGTATCCAAGCTCCTGTTTCAACACCTGCGGAGATTCTGCTGGATGCTCTACGGAAGTCTCTTATCAGGCGTACTTCACTTTATACAATTTTCCAGGGTACAACATCTGCTTCCAGAAAAGCAGAACTTGGTCCTGTGGCCATTCTTTTTTCCGGTGGATTGGATTCTATGATACTAGCAGCATTACTGGACGAGTGCCTTGATGCCTGTTATGAGATAGATCTTCTTAATGTCAGCTTTGATGGATGTTCTGCACCTGATCGAATCTCAGCAAAGGCTGGAGACCTGAATATTGGAATAGCTTTGTGGCTGGCCTCTGGTGGTGATGGTTGGATTTATGAATCAATCGACAAGGATGATAAGTTTCATCGACGTGTAAAATATAAGTCTCAGGCCAAGATTCTCCTTGTTGGTTCTGGTGCCGATGAGCAATGTGCTGGTTATGGTAGGCATCGAACAAAATATAGACAAGGGGGCTGGCATCTTTTAAATGAGGAAATGAAGTTGGATATTCAGAGAATCTGGAAGAGAAATCTTGGGAGAGATGACAGATGTATTGCAGATAATGGGAAGGAGGCTAGATTTCCCTTTCTGGATGAAGACGTTATACATACATTGCTAGCATTTCCTCTATGGGAGGTTACCAACCTCGAGAAACCTGCTGGAACCGGTGATAAGAAGATACTTAGGGAGGTTGCGAAATTGCTCGGTCTGCACGAAGCAGGAGCTCTACCTAAAAGAGCAATACAGCACATCCGCCCTCTCTTCCTTCCAACATCTGAAGAAAAACAGAAGGAATACAGAAGCGCGCAGCAGTGCTGGCTCTGTGTGAAGGAAATTTTCGGCAGCATGTGGAACTGGAGGAACGGCAATGGAATGAAGAAACGGAAAATGATCGCGCTGGAATAG 1959 44.67 MCGIALVVSGCRLDLSSLHVDARAPSPHPVHEHLEFSIDDLKAALRRRGPDSLGEVKVFISSICSNPGEEQQFECFVERVDCGVAFQNQNDQHEMANGRILQSHASCSSPISGAQFCFLGATLQLRGLNPIVQPLMDASRNVLVYNGEIFGGIHVEYHQNDAEALMQALGNCCASNVSLDTNTCVGECKRESTIVDVLSNIQGPWAIIYFADSAKTLWFGRDAFGRRSLLVHWPTVEDSRFLLSSVSPASSMFHDSGHDNDNGTCEVSFWEELPCGIYSISFDARSTDGCLVGEVKRHEWTNESLKELIEWKRTCIVPKPGDISSSYHEDLLSQHESNSACLHNLQSVSEGIQAPVSTPAEILLDALRKSLIRRTSLYTIFQGTTSASRKAELGPVAILFSGGLDSMILAALLDECLDACYEIDLLNVSFDGCSAPDRISAKAGDLNIGIALWLASGGDGWIYESIDKDDKFHRRVKYKSQAKILLVGSGADEQCAGYGRHRTKYRQGGWHLLNEEMKLDIQRIWKRNLGRDDRCIADNGKEARFPFLDEDVIHTLLAFPLWEVTNLEKPAGTGDKKILREVAKLLGLHEAGALPKRAIQHIRPLFLPTSEEKQKEYRSAQQCWLCVKEIFGSMWNWRNGNGMKKRKMIALE 652
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8996915 9003756 + CmoCh04G017900.1 Cmo04g01790 380765

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g01790 652 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 390 593 - -
Cmo04g01790 652 CDD Asn_Synthase_B_C 394 601 IPR001962 GO:0004066|GO:0006529
Cmo04g01790 652 PANTHER ASPARAGINE SYNTHETASE DOMAIN-CONTAINING PROTEIN 1 1 444 - -
Cmo04g01790 652 PANTHER ASPARAGINE SYNTHETASE DOMAIN-CONTAINING PROTEIN 1 445 632 - -
Cmo04g01790 652 Pfam Asparagine synthase 508 585 IPR001962 GO:0004066|GO:0006529
Cmo04g01790 652 Gene3D HUPs 376 628 IPR014729 -
Cmo04g01790 652 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 29 265 IPR029055 -
Cmo04g01790 652 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 41 249 IPR029055 -
Cmo04g01790 652 Pfam Glutamine amidotransferase domain 133 245 IPR017932 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g01790 - - - bhj:120081619 1029.62
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g30 . . . . . Bpe10g00901 . Bma15g00130 Cmo04g01790 . . . . . Sed06g1781 . Cpe01g01509 Bhi07g01483 Tan04g0990 Cmetu10g1518 Lac13g0381 Hepe10g1800 . . Cla05g02389 . . Cco05g2636 Clacu05g2563 Cmu05g2420 Cre05g2537 Cone13ag0903 Cone19ag0900 . . Lsi04g00360 Csa05g02517 Chy10g01061 Cme10g00354 Blo06g00929 . . . . . . . . . . Cma04g01705 . Car04g01740 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007690 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 2 1 1 3 2 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo04g01790 Cmo_Chr04 FPKM 39.00996 41.808224 27.474337 26.014271 14.443247 13.003086 11.755663 92.661438 96.384201 86.127144