Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g01795 ATGAGCAGCTCCCAAGACAAATCCTCCATGGATTTGGTTCAACCAAATGACCATCTTTGTTATGTCAAATGCAACTTTTGCAACACTCTTCTCGCGGTTGGGATACCATGCAGACGTTTGTTGGAGACAGTGACAGTGAAATGTGGTAATTGTAGTAATCTGTCGTTTTTGAGCACAAGACCACCTTTACAAGGCCAACGCATTGATCATCATCCTCTCACTTTTCAGCCTCAGGTTGGCTTCTCTTATGATACTCGAAAGGGTGCATCGATATCGTCTACATCGTCGTCATCGTCTTCAATGCCAAATGAACCTCCCTCTCCAAATTTTGTTGTCAAACCTCCGGAGAAGAAACACAGACTCCCATCAGCTTACAATTGTTTCATGAAGGAGGAGATTCAACGCATCAAAGCTGCCAACCCAGAAATCCCACATCGAGAAGCATTCAGTGCCGCAGCAAAAAACTGGGCAAGGTACATTCCAAATTCCGCAGCTGGGTCGGTTTCTGGGACTCCCAACGACGTTCTTAGGGTTTTCAAACTTGCAGGAATGATACGGTTTAGAGCACTGGAAGAATCGGACATATCAAATGGCTGTCTGCTCTAG 606 45.38 MSSSQDKSSMDLVQPNDHLCYVKCNFCNTLLAVGIPCRRLLETVTVKCGNCSNLSFLSTRPPLQGQRIDHHPLTFQPQVGFSYDTRKGASISSTSSSSSSMPNEPPSPNFVVKPPEKKHRLPSAYNCFMKEEIQRIKAANPEIPHREAFSAAAKNWARYIPNSAAGSVSGTPNDVLRVFKLAGMIRFRALEESDISNGCLL 201
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 9028899 9030980 + CmoCh04G017950.1 Cmo04g01795 380770
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g01795 201 PANTHER PROTEIN CRABS CLAW 8 169 - -
Cmo04g01795 201 Gene3D High mobility group box domain 100 163 IPR036910 -
Cmo04g01795 201 MobiDBLite consensus disorder prediction 86 106 - -
Cmo04g01795 201 PANTHER PROTEIN YABBY 6-RELATED 8 169 IPR006780 GO:0007275
Cmo04g01795 201 SUPERFAMILY HMG-box 105 157 IPR036910 -
Cmo04g01795 201 MobiDBLite consensus disorder prediction 86 116 - -
Cmo04g01795 201 Pfam YABBY protein 15 159 IPR006780 GO:0007275
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo04g01795 Cmo18g01120 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01795 Cmo-Chr4:9028899 Cmo12g01231 Cmo-Chr12:10977446 8.68E-41 dispersed
Cmo18g01120 Cmo-Chr18:11567244 Cmo04g01795 Cmo-Chr4:9028899 3.01E-74 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9660 PF04690 YABBY 4.10E-53 CL0114 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g01795 K25796 - cmos:111458487 348.206