Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g01798 ATGGGGAAAACTGGAACCAAGTTGCCAAGTTTCTGCCTGAACCGGATCCGGCCTCACGTTCGAGTGCCTATTCAGTCCAAATTGGACTCTGTTTCTGTGAAAACCGGACCGAAGAAGGCTGATGATTGTGTAGAGGGTGGTGAGGTTGGAGCTAAACCAGGGCTGGGAAATGGAAGGAAGATCATGATTGTGGTTGACTCCACCATTGAAGCTGAAGGAGCTCTTCAATGGGCTCTGTCTCACACTGTGCAGAATCAAGACAAGATTGTTCTACTTCATGTTATCAAGCCTTCAAGAAAGGGGGAAGGACTAAGCAAGGAGACATCACCAAGAGCATATGAATTGGTTCATTCCATGAGAAATTTATGTCAATTGAAGAGACCAGAGGTGGAAGTCGAAGTTGCAGTGGTGGAAGGAGGGAAAGAGAAAGGGTCGGTGATTGTGGAAGAAGCGAGAAAGCAAGAGGCATCGTTGCTGGTTTTGGGGCAGAAGAAACGGTCCACGACATGGCGGCTTCTGATGGTGTGGGCTGGACACCGATGGGGGGGCGGCGGCGGCGGCGGCGGTGGCGGTGGAGTAGTGGAGTATTGCATACAGAATGCGAGCTGTATGGCGATTGCAGTGAGAAGGAAGAGCAAGAAATTGGGTGGGTATTTGATCACGACAAAGCGACAAAAGGATTTCTGGCTTTTGGCTTAA 699 49.93 MGKTGTKLPSFCLNRIRPHVRVPIQSKLDSVSVKTGPKKADDCVEGGEVGAKPGLGNGRKIMIVVDSTIEAEGALQWALSHTVQNQDKIVLLHVIKPSRKGEGLSKETSPRAYELVHSMRNLCQLKRPEVEVEVAVVEGGKEKGSVIVEEARKQEASLLVLGQKKRSTTWRLLMVWAGHRWGGGGGGGGGGGVVEYCIQNASCMAIAVRRKSKKLGGYLITTKRQKDFWLLA 232
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 9043364 9044646 + CmoCh04G017980.1 Cmo04g01798 380773

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g01798 232 Gene3D HUPs 58 216 IPR014729 -
Cmo04g01798 232 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 59 212 - -
Cmo04g01798 232 CDD USP_Like 60 208 - -
Cmo04g01798 232 PANTHER ADENINE NUCLEOTIDE ALPHA HYDROLASES-LIKE SUPERFAMILY PROTEIN 1 232 - -
Cmo04g01798 232 Pfam Universal stress protein family 59 209 IPR006016 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g01798 - - - cmos:111458216 429.483
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo04g01798 Cmo18g01113 CST
Cmo04g01798 Cmo18g01118 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01446 Cmo-Chr1:11280239 Cmo04g01798 Cmo-Chr4:9043364 4.84E-25 dispersed
Cmo04g01798 Cmo-Chr4:9043364 Cmo09g00791 Cmo-Chr9:4043178 6.30E-36 dispersed
Cmo15g00695 Cmo-Chr15:3397124 Cmo04g01798 Cmo-Chr4:9043364 3.05E-07 dispersed
Cmo13g01084 Cmo-Chr13:8971326 Cmo04g01798 Cmo-Chr4:9043364 2.40E-09 transposed
Cmo11g00227 Cmo-Chr11:1122330 Cmo04g01798 Cmo-Chr4:9043364 1.15E-38 wgd
Cmo13g01102 Cmo-Chr13:9047873 Cmo04g01798 Cmo-Chr4:9043364 2.62E-57 wgd
Cmo18g01118 Cmo-Chr18:11556233 Cmo04g01798 Cmo-Chr4:9043364 1.57E-98 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g2 Blo01g00462 . . . . Bpe10g00911 Bma14g01718 . Cmo04g01798 Cmo18g01113 . Cma18g01089 . Car18g01010 . Cpe09g00233 Cpe01g01517 . . . . . . . . . . . . . . Cone13ag0891 Cone19ag0890 Cone6ag0514 Cone9ag0526 . Csa05g02523 . . Blo06g00939 Blo11g00801 . . . . . . . . . Cma04g01711 . Car04g01745 . . Cpe07g00095 . . . . . . . . . . . . . . . . . .
Vvi1g6 . . . . . . Bma14g01716 . Cmo04g01798 Cmo18g01118 . Cma18g01096 . Car18g01011 Sed07g2036 Cpe09g00230 . Bhi07g01468 Tan04g0973 Cmetu10g0107 Lac13g0388 Hepe10g1807 . . Cla05g02384 Cam05g2556 Cec05g2588 Cco05g2629 Clacu05g2557 Cmu05g2414 Cre05g2531 Cone13ag0894 . . Cone9ag0527 Lsi04g00353 Csa05g02523 Chy10g01067 Cme10g00347 . . . . . . . Bma06g00744 . . . Cma04g01711 . Car04g01745 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009362 0 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 0 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo04g01798 Cmo_Chr04 FPKM 29.755905 37.298042 30.272358 28.980232 34.357452 29.486658 31.92609 12.645615 13.87413 13.900449