Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo04g01815 | ATGCCGCCTTCTTCAAACAATACTTCAAACGATACTTCAAACGATACCTCAAAGGATACTTCAAAGGATACTTCAAACGATACCTCAAAGGATACTTCAAAGGATACTTCAAACGATACTTCAAAGGATACTTCAAAGGATACTTCAAAGGATACTTCAAAGGATACTTCAAACGGTACTTCAAACGATACTTCAAACGATACTTCAAACGATACTTCTTCTCCTACATCGGATTTTGTTTCAAATTCAAGTTTGCCGCCTGAAGCTCCGGATTCTTCTTCTTATTCTCCGCCGCCGCAATCAAATGACTTTACAACGTTCCCACTTAATGAAGCCGATGCTCCTGACCCGTCGTATGTGTCATCGTCAATTGAAGCTCCACCTGCCGACCATGAAGGTTCACCATCTTCCTCACCGTCAGCTTCTCCGGAACCTGAAAGGACATCGCTGGCCCCTACTATCGCCTCCAATTTAATTGCATTCGACGAGAGTCCGCCACCGCGTAAAGTTTCTGCTTCACCACCGCCGTCTCCCCAGCCTCCTCCACCGCCGCCTCATCCACCACCACCACCTTCACCATTGCCTTCACCACCGCCTCCAGAACAGTCGGATGACGTTATCGTCGTCGATCCTCCACCTGCCCCTGTTCCGACCAAGAAAAAATCTTCGGAACATCGAGGAAGTCCACCTTCTCCAATATCTGAGAATGATTCCCCTGATGTGGCGAATGAAAGCACCGATCGGGGTTCTAAAAAAGCCAAGGAGCCTCCGCCATCTGAATCGACGGATCCTCTTCCTTCACCAGAAAGTCCGGACGTGATTCCCTCACCAGGTGCAAACTCGGCGAAGGGGGAACGAGCTCGGAGTCCACCTCCAGAAACAATTTCTCCCGCACCAGAGGATAACATTCCTTCACCTCCCATAGTCACATCCGCTCGCGCTCCAAACAACTCACCTCCTTCTATCGACTCAACGCCCGTGAAATCAACATTGGGGCAGTCCAATGCACCATCGTCTGTTTCAAGTAGTCACACTGATATTGCAGTAGGCGCTGCAGTCATTGGAGTTTTCGTAATCGCTTTGGTTGCTGTGATTTTTGTGTTACTAAGGAAGAAGAAAAGACAGGGAAACATGTATGGGGGCCCCTACACGCCTCCTAATAACTACGGTGCTAAATCAGATGGAAATTACTATCCACATCAACATATGGGCAATTCTGGCTCTGCTGAAGGCTTCTACACTCAGGTCCCACATACTCCGGTTGGAAATAGCTTTGGGAGTCAAAAAGGAACAGGATCCAGTGGCAGTGGAGCAGACTCAGGTGTGATAAACAGTGCTAAGTTCGTCTTTAGCTATGAGGAATTGATGGAGATTACGTCTGGATTTTCGCGTCAAAACATTCTTGGGGAAGGTGGGTTTGGATGTGTCTACCAGGGTTGGCTTCCGGCAGGGAGGTCAGTGGCTGTGAAGCAACTCAAGGCAGGAAGTGGACAGGGGGAGAGGGAATTCAAGGCGGAAGTTGAGATTATCAGTCGTGTTCATCATCGGCATTTGGTGTCTTTAGTGGGCTACTGCGTCTCTGAGAATCATAGATTGCTCATCTATGATTTTGTTCCCAATAAGACTCTTGAGCATCATCTCCATGGCGGTAATGGAGTACCCGTGTTGGATTGGTCCAAAAGACTCAAAATCGCTTTAGGAGCTGCAAAGGGTTTGGCATATCTTCATGAAGATTGCCATCCCAGAATTATTCACAGAGACATCAAGTCAGCCAACATTTTGCTGGATGATGCTTTTGACGCACAGTCTCGGATTCATGGACAACTTCGAACACAGGTTGCAGATTTTGGACTTGCAAAACTGACAAACGATACAAACACCCACGTTTCGACTCGTGTCATGGGGACATTTGGGTACATGGCGCCTGAGTACGCATCAAGTGGGAAATTGACAGACAGATCAGATGTGTTCTCGTTTGGGGTTGTGCTTCTTGAGCTTATTACTGGTCGTAAGCCTGTTGATCCCACTCAGCCTTTGGGGGATGAGAGTTTGGTTGAATGGGCTCGTCCACTCCTCCTTCACACCCTTGAAACTGGGGTTTTTGACGGATTGATAGATCCACGCCTTGGAAAACAGTATGTGGAAAGTGAAATGTTCAGAATGATCGAAGCAGCAGCTGCCTGCGTTCGTCATTCGGCTCCCAAAAGGCCTCGCATGGTTCAGGTGGTGAGATCACTAGATATTGAAACAGACATGTCTGACCTCTCCAATGGTGTCAAATATGGCCAGAGCACCATCTATGATTCTGGACAATACAGTCAAGACATCTCTAAATTCAGGAGAATGGCGCTTGGTGGAGACAGCTCCGAATTCGACATTTACAGTAGCGAATACAGTTCCAGAGAAATGAATGCAAGTGGAGAATCATGGAGATTCGAAAACAACTCAAGCGGTGAATCAGAAACTCGAGCTTTTCACGGACGAACTGGCGCACCACAAAGTCACCCTAGCGGTCGACAATTCTAA | 2526 | 47.66 | MPPSSNNTSNDTSNDTSKDTSKDTSNDTSKDTSKDTSNDTSKDTSKDTSKDTSKDTSNGTSNDTSNDTSNDTSSPTSDFVSNSSLPPEAPDSSSYSPPPQSNDFTTFPLNEADAPDPSYVSSSIEAPPADHEGSPSSSPSASPEPERTSLAPTIASNLIAFDESPPPRKVSASPPPSPQPPPPPPHPPPPPSPLPSPPPPEQSDDVIVVDPPPAPVPTKKKSSEHRGSPPSPISENDSPDVANESTDRGSKKAKEPPPSESTDPLPSPESPDVIPSPGANSAKGERARSPPPETISPAPEDNIPSPPIVTSARAPNNSPPSIDSTPVKSTLGQSNAPSSVSSSHTDIAVGAAVIGVFVIALVAVIFVLLRKKKRQGNMYGGPYTPPNNYGAKSDGNYYPHQHMGNSGSAEGFYTQVPHTPVGNSFGSQKGTGSSGSGADSGVINSAKFVFSYEELMEITSGFSRQNILGEGGFGCVYQGWLPAGRSVAVKQLKAGSGQGEREFKAEVEIISRVHHRHLVSLVGYCVSENHRLLIYDFVPNKTLEHHLHGGNGVPVLDWSKRLKIALGAAKGLAYLHEDCHPRIIHRDIKSANILLDDAFDAQSRIHGQLRTQVADFGLAKLTNDTNTHVSTRVMGTFGYMAPEYASSGKLTDRSDVFSFGVVLLELITGRKPVDPTQPLGDESLVEWARPLLLHTLETGVFDGLIDPRLGKQYVESEMFRMIEAAAACVRHSAPKRPRMVQVVRSLDIETDMSDLSNGVKYGQSTIYDSGQYSQDISKFRRMALGGDSSEFDIYSSEYSSREMNASGESWRFENNSSGESETRAFHGRTGAPQSHPSGRQF | 841 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 9151971 | 9155188 | + | CmoCh04G018150.1 | Cmo04g01815 | 380790 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo04g01815 | 841 | MobiDBLite | consensus disorder prediction | 309 | 342 | - | - | |
Cmo04g01815 | 841 | PANTHER | PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK13-RELATED | 179 | 808 | - | - | |
Cmo04g01815 | 841 | PANTHER | PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 | 179 | 808 | - | - | |
Cmo04g01815 | 841 | ProSiteProfiles | Protein kinase domain profile. | 462 | 748 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo04g01815 | 841 | MobiDBLite | consensus disorder prediction | 802 | 823 | - | - | |
Cmo04g01815 | 841 | MobiDBLite | consensus disorder prediction | 16 | 53 | - | - | |
Cmo04g01815 | 841 | MobiDBLite | consensus disorder prediction | 1 | 15 | - | - | |
Cmo04g01815 | 841 | SUPERFAMILY | Protein kinase-like (PK-like) | 443 | 746 | IPR011009 | - | |
Cmo04g01815 | 841 | Gene3D | Phosphorylase Kinase; domain 1 | 429 | 537 | - | - | |
Cmo04g01815 | 841 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 583 | 595 | IPR008271 | GO:0004672|GO:0006468 | |
Cmo04g01815 | 841 | MobiDBLite | consensus disorder prediction | 241 | 258 | - | - | |
Cmo04g01815 | 841 | Pfam | Protein tyrosine and serine/threonine kinase | 465 | 675 | IPR001245 | GO:0004672|GO:0006468 | |
Cmo04g01815 | 841 | MobiDBLite | consensus disorder prediction | 1 | 342 | - | - | |
Cmo04g01815 | 841 | MobiDBLite | consensus disorder prediction | 54 | 108 | - | - | |
Cmo04g01815 | 841 | CDD | STKc_IRAK | 468 | 747 | - | - | |
Cmo04g01815 | 841 | MobiDBLite | consensus disorder prediction | 133 | 155 | - | - | |
Cmo04g01815 | 841 | MobiDBLite | consensus disorder prediction | 259 | 273 | - | - | |
Cmo04g01815 | 841 | SMART | serkin_6 | 462 | 748 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo04g01815 | 841 | Gene3D | Transferase(Phosphotransferase) domain 1 | 538 | 762 | - | - | |
Cmo04g01815 | 841 | ProSitePatterns | Protein kinases ATP-binding region signature. | 468 | 490 | IPR017441 | GO:0005524 | |
Cmo04g01815 | 841 | MobiDBLite | consensus disorder prediction | 802 | 841 | - | - | |
Cmo04g01815 | 841 | MobiDBLite | consensus disorder prediction | 168 | 218 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo04g01815 | Cmo-Chr4:9151971 | Cmo15g00209 | Cmo-Chr15:1017698 | 6.28E-171 | dispersed | |
Cmo20g00866 | Cmo-Chr20:4382714 | Cmo04g01815 | Cmo-Chr4:9151971 | 6.23E-123 | dispersed | |
Cmo18g00802 | Cmo-Chr18:9482250 | Cmo04g01815 | Cmo-Chr4:9151971 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
74285 | PF07714 | PK_Tyr_Ser-Thr | 4.20E-41 | CL0016 | Cmo | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo04g01815 | - | - | cpep:111803284 | 1354.35 |