Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g01815 ATGCCGCCTTCTTCAAACAATACTTCAAACGATACTTCAAACGATACCTCAAAGGATACTTCAAAGGATACTTCAAACGATACCTCAAAGGATACTTCAAAGGATACTTCAAACGATACTTCAAAGGATACTTCAAAGGATACTTCAAAGGATACTTCAAAGGATACTTCAAACGGTACTTCAAACGATACTTCAAACGATACTTCAAACGATACTTCTTCTCCTACATCGGATTTTGTTTCAAATTCAAGTTTGCCGCCTGAAGCTCCGGATTCTTCTTCTTATTCTCCGCCGCCGCAATCAAATGACTTTACAACGTTCCCACTTAATGAAGCCGATGCTCCTGACCCGTCGTATGTGTCATCGTCAATTGAAGCTCCACCTGCCGACCATGAAGGTTCACCATCTTCCTCACCGTCAGCTTCTCCGGAACCTGAAAGGACATCGCTGGCCCCTACTATCGCCTCCAATTTAATTGCATTCGACGAGAGTCCGCCACCGCGTAAAGTTTCTGCTTCACCACCGCCGTCTCCCCAGCCTCCTCCACCGCCGCCTCATCCACCACCACCACCTTCACCATTGCCTTCACCACCGCCTCCAGAACAGTCGGATGACGTTATCGTCGTCGATCCTCCACCTGCCCCTGTTCCGACCAAGAAAAAATCTTCGGAACATCGAGGAAGTCCACCTTCTCCAATATCTGAGAATGATTCCCCTGATGTGGCGAATGAAAGCACCGATCGGGGTTCTAAAAAAGCCAAGGAGCCTCCGCCATCTGAATCGACGGATCCTCTTCCTTCACCAGAAAGTCCGGACGTGATTCCCTCACCAGGTGCAAACTCGGCGAAGGGGGAACGAGCTCGGAGTCCACCTCCAGAAACAATTTCTCCCGCACCAGAGGATAACATTCCTTCACCTCCCATAGTCACATCCGCTCGCGCTCCAAACAACTCACCTCCTTCTATCGACTCAACGCCCGTGAAATCAACATTGGGGCAGTCCAATGCACCATCGTCTGTTTCAAGTAGTCACACTGATATTGCAGTAGGCGCTGCAGTCATTGGAGTTTTCGTAATCGCTTTGGTTGCTGTGATTTTTGTGTTACTAAGGAAGAAGAAAAGACAGGGAAACATGTATGGGGGCCCCTACACGCCTCCTAATAACTACGGTGCTAAATCAGATGGAAATTACTATCCACATCAACATATGGGCAATTCTGGCTCTGCTGAAGGCTTCTACACTCAGGTCCCACATACTCCGGTTGGAAATAGCTTTGGGAGTCAAAAAGGAACAGGATCCAGTGGCAGTGGAGCAGACTCAGGTGTGATAAACAGTGCTAAGTTCGTCTTTAGCTATGAGGAATTGATGGAGATTACGTCTGGATTTTCGCGTCAAAACATTCTTGGGGAAGGTGGGTTTGGATGTGTCTACCAGGGTTGGCTTCCGGCAGGGAGGTCAGTGGCTGTGAAGCAACTCAAGGCAGGAAGTGGACAGGGGGAGAGGGAATTCAAGGCGGAAGTTGAGATTATCAGTCGTGTTCATCATCGGCATTTGGTGTCTTTAGTGGGCTACTGCGTCTCTGAGAATCATAGATTGCTCATCTATGATTTTGTTCCCAATAAGACTCTTGAGCATCATCTCCATGGCGGTAATGGAGTACCCGTGTTGGATTGGTCCAAAAGACTCAAAATCGCTTTAGGAGCTGCAAAGGGTTTGGCATATCTTCATGAAGATTGCCATCCCAGAATTATTCACAGAGACATCAAGTCAGCCAACATTTTGCTGGATGATGCTTTTGACGCACAGTCTCGGATTCATGGACAACTTCGAACACAGGTTGCAGATTTTGGACTTGCAAAACTGACAAACGATACAAACACCCACGTTTCGACTCGTGTCATGGGGACATTTGGGTACATGGCGCCTGAGTACGCATCAAGTGGGAAATTGACAGACAGATCAGATGTGTTCTCGTTTGGGGTTGTGCTTCTTGAGCTTATTACTGGTCGTAAGCCTGTTGATCCCACTCAGCCTTTGGGGGATGAGAGTTTGGTTGAATGGGCTCGTCCACTCCTCCTTCACACCCTTGAAACTGGGGTTTTTGACGGATTGATAGATCCACGCCTTGGAAAACAGTATGTGGAAAGTGAAATGTTCAGAATGATCGAAGCAGCAGCTGCCTGCGTTCGTCATTCGGCTCCCAAAAGGCCTCGCATGGTTCAGGTGGTGAGATCACTAGATATTGAAACAGACATGTCTGACCTCTCCAATGGTGTCAAATATGGCCAGAGCACCATCTATGATTCTGGACAATACAGTCAAGACATCTCTAAATTCAGGAGAATGGCGCTTGGTGGAGACAGCTCCGAATTCGACATTTACAGTAGCGAATACAGTTCCAGAGAAATGAATGCAAGTGGAGAATCATGGAGATTCGAAAACAACTCAAGCGGTGAATCAGAAACTCGAGCTTTTCACGGACGAACTGGCGCACCACAAAGTCACCCTAGCGGTCGACAATTCTAA 2526 47.66 MPPSSNNTSNDTSNDTSKDTSKDTSNDTSKDTSKDTSNDTSKDTSKDTSKDTSKDTSNGTSNDTSNDTSNDTSSPTSDFVSNSSLPPEAPDSSSYSPPPQSNDFTTFPLNEADAPDPSYVSSSIEAPPADHEGSPSSSPSASPEPERTSLAPTIASNLIAFDESPPPRKVSASPPPSPQPPPPPPHPPPPPSPLPSPPPPEQSDDVIVVDPPPAPVPTKKKSSEHRGSPPSPISENDSPDVANESTDRGSKKAKEPPPSESTDPLPSPESPDVIPSPGANSAKGERARSPPPETISPAPEDNIPSPPIVTSARAPNNSPPSIDSTPVKSTLGQSNAPSSVSSSHTDIAVGAAVIGVFVIALVAVIFVLLRKKKRQGNMYGGPYTPPNNYGAKSDGNYYPHQHMGNSGSAEGFYTQVPHTPVGNSFGSQKGTGSSGSGADSGVINSAKFVFSYEELMEITSGFSRQNILGEGGFGCVYQGWLPAGRSVAVKQLKAGSGQGEREFKAEVEIISRVHHRHLVSLVGYCVSENHRLLIYDFVPNKTLEHHLHGGNGVPVLDWSKRLKIALGAAKGLAYLHEDCHPRIIHRDIKSANILLDDAFDAQSRIHGQLRTQVADFGLAKLTNDTNTHVSTRVMGTFGYMAPEYASSGKLTDRSDVFSFGVVLLELITGRKPVDPTQPLGDESLVEWARPLLLHTLETGVFDGLIDPRLGKQYVESEMFRMIEAAAACVRHSAPKRPRMVQVVRSLDIETDMSDLSNGVKYGQSTIYDSGQYSQDISKFRRMALGGDSSEFDIYSSEYSSREMNASGESWRFENNSSGESETRAFHGRTGAPQSHPSGRQF 841
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 9151971 9155188 + CmoCh04G018150.1 Cmo04g01815 380790
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g01815 841 MobiDBLite consensus disorder prediction 309 342 - -
Cmo04g01815 841 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK13-RELATED 179 808 - -
Cmo04g01815 841 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 179 808 - -
Cmo04g01815 841 ProSiteProfiles Protein kinase domain profile. 462 748 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo04g01815 841 MobiDBLite consensus disorder prediction 802 823 - -
Cmo04g01815 841 MobiDBLite consensus disorder prediction 16 53 - -
Cmo04g01815 841 MobiDBLite consensus disorder prediction 1 15 - -
Cmo04g01815 841 SUPERFAMILY Protein kinase-like (PK-like) 443 746 IPR011009 -
Cmo04g01815 841 Gene3D Phosphorylase Kinase; domain 1 429 537 - -
Cmo04g01815 841 ProSitePatterns Serine/Threonine protein kinases active-site signature. 583 595 IPR008271 GO:0004672|GO:0006468
Cmo04g01815 841 MobiDBLite consensus disorder prediction 241 258 - -
Cmo04g01815 841 Pfam Protein tyrosine and serine/threonine kinase 465 675 IPR001245 GO:0004672|GO:0006468
Cmo04g01815 841 MobiDBLite consensus disorder prediction 1 342 - -
Cmo04g01815 841 MobiDBLite consensus disorder prediction 54 108 - -
Cmo04g01815 841 CDD STKc_IRAK 468 747 - -
Cmo04g01815 841 MobiDBLite consensus disorder prediction 133 155 - -
Cmo04g01815 841 MobiDBLite consensus disorder prediction 259 273 - -
Cmo04g01815 841 SMART serkin_6 462 748 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo04g01815 841 Gene3D Transferase(Phosphotransferase) domain 1 538 762 - -
Cmo04g01815 841 ProSitePatterns Protein kinases ATP-binding region signature. 468 490 IPR017441 GO:0005524
Cmo04g01815 841 MobiDBLite consensus disorder prediction 802 841 - -
Cmo04g01815 841 MobiDBLite consensus disorder prediction 168 218 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01815 Cmo-Chr4:9151971 Cmo15g00209 Cmo-Chr15:1017698 6.28E-171 dispersed
Cmo20g00866 Cmo-Chr20:4382714 Cmo04g01815 Cmo-Chr4:9151971 6.23E-123 dispersed
Cmo18g00802 Cmo-Chr18:9482250 Cmo04g01815 Cmo-Chr4:9151971 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74285 PF07714 PK_Tyr_Ser-Thr 4.20E-41 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g01815 - - cpep:111803284 1354.35