Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g01834 ATGGAAGAAATGTACGGGTTGCAGTCCAGGGCGGAGTATTCGGATAAGGCGTTGATGTCGCCGGAGAATCTGATTTTTCCGCCGGATTATCAGAGTCTTTTAGTGAGCTCTGGAGCGTTTCGTGATCGGATTCCGGTGTTTGGATCCAACGATTTGCTTTCGGCGGCGGCGTCCGCGATTTCGGAAGCTGAAGCAGTATCGATCACGCCGGAAATTCAAGGTGAAGAAGATATGGTGAACGTGATCAAAGCGAAAATTTCTTCTCATCCTACTTATCCTCGTTTACTCGACGCCTATATTGACTGCCAAAAGGTAGGGGCGCCTCCAGAGATTGCACATTTGTTAGAGGGAATCCGTCAAGAAACCGACCTTTGTAACCGTCACGCTGTCACCACGTGCTTAGGCGCAGATCCTGAGCTTGATGAATTCATGGAAACGTACTGCGATATGTTGGTGAAGTATAAATCAGATCTCAAAAGGCCTTTCGACGAAGCAACTACATTCTTGAACAAGATCGAACTGCAACTTAGTAGCCTCTGCACTGGCGCCTTCTCCAGAAGCCATTCCGATGAAGGAGCTGTCTCGTCGGATGAAGAGTTGAGCGGAGGAGAGATGGAAGTTGTGGAGCCGGAAACTCAAACCAAAGGCGAGAACAGGGATCTCAAGGACAAGCTTTTACGTCGATTTGGCAGTCATATTAGTAGCTTAAAATTGGAGTTCTCAAAGAAGAAGAAAAAAGGAAAATTACCAAAAGAAGCCAGGCAGACACTCCTTGAATGGTGGAACGTTCACTATAGATGGCCATATCCTACGGAAGCCGATAAGGTTGCACTGGCAGAGAGAACAGGGCTCGACCAGAAGCAAATTAACAATTGGTTCATAAATCAGCGGAAACGCCACTGGAAGCCATCAGACAATATGCAGTTTGAGGGAATGGATGGGCTTTCTTCTGGTAGATTATTCAGAGAGGACTGA 975 47.08 MEEMYGLQSRAEYSDKALMSPENLIFPPDYQSLLVSSGAFRDRIPVFGSNDLLSAAASAISEAEAVSITPEIQGEEDMVNVIKAKISSHPTYPRLLDAYIDCQKVGAPPEIAHLLEGIRQETDLCNRHAVTTCLGADPELDEFMETYCDMLVKYKSDLKRPFDEATTFLNKIELQLSSLCTGAFSRSHSDEGAVSSDEELSGGEMEVVEPETQTKGENRDLKDKLLRRFGSHISSLKLEFSKKKKKGKLPKEARQTLLEWWNVHYRWPYPTEADKVALAERTGLDQKQINNWFINQRKRHWKPSDNMQFEGMDGLSSGRLFRED 324
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 9211224 9218267 + CmoCh04G018340.1 Cmo04g01834 380809
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g01834 324 Pfam ELK domain 220 241 IPR005539 GO:0003677
Cmo04g01834 324 MobiDBLite consensus disorder prediction 304 324 - -
Cmo04g01834 324 ProSitePatterns 'Homeobox' domain signature. 278 301 IPR017970 GO:0000981|GO:0006355
Cmo04g01834 324 Pfam KNOX2 domain 134 180 IPR005541 GO:0003677|GO:0005634
Cmo04g01834 324 SMART KNOX1_2 80 124 IPR005540 GO:0003677|GO:0005634
Cmo04g01834 324 ProSiteProfiles ELK domain profile. 220 240 IPR005539 GO:0003677
Cmo04g01834 324 ProSiteProfiles 'Homeobox' domain profile. 240 303 IPR001356 GO:0003677
Cmo04g01834 324 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 1 313 - -
Cmo04g01834 324 SMART KNOX2_2 130 181 IPR005541 GO:0003677|GO:0005634
Cmo04g01834 324 SUPERFAMILY Homeodomain-like 241 315 IPR009057 -
Cmo04g01834 324 SMART ELK_2 220 241 IPR005539 GO:0003677
Cmo04g01834 324 CDD homeodomain 252 304 IPR001356 GO:0003677
Cmo04g01834 324 Pfam Homeobox KN domain 260 299 IPR008422 GO:0003677|GO:0006355
Cmo04g01834 324 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 6 1 313 - -
Cmo04g01834 324 MobiDBLite consensus disorder prediction 186 216 - -
Cmo04g01834 324 Gene3D - 238 312 - -
Cmo04g01834 324 SMART HOX_1 242 307 IPR001356 GO:0003677
Cmo04g01834 324 Pfam KNOX1 domain 82 122 IPR005540 GO:0003677|GO:0005634
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01834 Cmo-Chr4:9211224 Cmo11g00089 Cmo-Chr11:428955 3.00E-95 dispersed
Cmo11g01880 Cmo-Chr11:13095540 Cmo04g01834 Cmo-Chr4:9211224 5.83E-73 dispersed
Cmo12g00559 Cmo-Chr12:3457585 Cmo04g01834 Cmo-Chr4:9211224 1.77E-71 dispersed
Cmo18g00789 Cmo-Chr18:9414147 Cmo04g01834 Cmo-Chr4:9211224 0 wgd
Cmo04g01834 Cmo-Chr4:9211224 Cmo05g00037 Cmo-Chr5:133814 5.15E-136 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9663 PF03791 KNOX2 3.30E-25 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g01834 - - csv:101211876 588.571