Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g01876 ATGCTTAGAGTTGATACAATGATGCCTACTAATGATTTTTTCATCTGGGTTCCTCTGCTCTTCCTGTGTTCTTCTCTATTCCTTCTTAAAATCATAAGAAAACAGGCAAAACCCAACAAGAAGCTTCTTCCTCCCACCCCTCCAAAGCTTCCTTTGTTGGGCCATTTGCACCTCCTTGGCTCTCATCCCCATCGCTCTTTTACTAAGCTTTCAAAAAAGTATGGCCCCGTCATGCTTCTCCAACTGGGCTCTGTCCCAACCATCGTAATCTCCTCTGCCGCCGCTGCAAAAGAGTTGTTTAAGTTCCATGATCTTGCTTCTTGCAGCCGCCCTCTCTTAACGGGTAGTGGAAGATTTTCATACAACTTCTTGGACCTAAATCTATCCCCCTACGGTGAACGTTGGAGGGAACTTCGGAAGATTTGTATGCTCCAGCTATTCACTGCTCGGCGGGTTCAATCATTTCGCGAAATTAGAGAAGAGGAAGTGGGGCGCCTTTTAAACTCTATCTCTCAATCCTCTTCTTCTTCAGCTCCAATTGATCTGAGTGACAAATCCTATTCTCTCACTGCAAATATAACAACAAGAGTTGCTTTCGGCAGCATCTTCAGCGGGGCAAAATTAGATGATGAACACTTTCAACATGTTATCCGGAGAGCAGTTGCAGCAATTGGAAGCTTCTCCATGACCGATTTCATTCCTACTTTCGGTTGGATTATTGATCGGTTAAATGGTGTTCATGAGAGGCTGGAGAAGAGCTTTGCTGAAATGGATGCCTTTTTTCAACATGTAGTCGACGATCGTATAAACTTCAAGGAGAGTTCTAAGAATGAAGAAAACATCGTTGATGTTTTGTTGAGAATGGAAAGGGAAAGCTCTGAATCTGATGCACTAAAAGTAACCCAAGATTGCATCAAAGCACTTATCATGGATATTTTTATAGCAGGAGTAGAAACAGGGGCAACCACCCTTGTTTGGGCCATGACAGAGCTAGTTAGAAATCCAAGAGTGATGAAGAAGCTACAACACGAGATTAGAAGTCGCATAAAAGACAATTCAGTGAAAGAGATGAACTTGGAAAAACTTGAGTATCTAAAAATGGTAGTGAAAGAGACTTTGAGATTGCATCCACCACTCCCACTTCTACTTCCAAGGGAAACTATCTTCCCTTTTAAGCTCAACGAATACGATATGGACCCCAAGGCTCATCTTCACATTAATGTGTGGGCCATTGGTCGAGACCCGCAATCTTGGACTAACCCAGAAGAGTTCCTTCCCGAGAGGTTTATAGGAAGCAATATCGATTATAAAGGACAGAACTTCGAGTTAATACCTTTCGGAAGTGGACGAAGAATTTGCCCTGCGATGAATTTGGCAACCCTTACGGTGGAGTTGGCAGTGGCTAATCTGTTGCTGTGTTTTGATTGGAAACTGGCGGATGGAATGAAAGAAGAAGATGTTGATACGGAAGAGGCTGCTGGTCTTGGGGCTGCCAAGAAATCACCCCTCACCCTTGTTCCAGTCCCTTACTTTTAA 1536 43.55 MLRVDTMMPTNDFFIWVPLLFLCSSLFLLKIIRKQAKPNKKLLPPTPPKLPLLGHLHLLGSHPHRSFTKLSKKYGPVMLLQLGSVPTIVISSAAAAKELFKFHDLASCSRPLLTGSGRFSYNFLDLNLSPYGERWRELRKICMLQLFTARRVQSFREIREEEVGRLLNSISQSSSSSAPIDLSDKSYSLTANITTRVAFGSIFSGAKLDDEHFQHVIRRAVAAIGSFSMTDFIPTFGWIIDRLNGVHERLEKSFAEMDAFFQHVVDDRINFKESSKNEENIVDVLLRMERESSESDALKVTQDCIKALIMDIFIAGVETGATTLVWAMTELVRNPRVMKKLQHEIRSRIKDNSVKEMNLEKLEYLKMVVKETLRLHPPLPLLLPRETIFPFKLNEYDMDPKAHLHINVWAIGRDPQSWTNPEEFLPERFIGSNIDYKGQNFELIPFGSGRRICPAMNLATLTVELAVANLLLCFDWKLADGMKEEDVDTEEAAGLGAAKKSPLTLVPVPYF 511
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 9446496 9448116 - CmoCh04G018760.1 Cmo04g01876 380851
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g01876 511 Pfam Cytochrome P450 44 495 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo04g01876 511 PRINTS E-class P450 group I signature 443 453 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo04g01876 511 PRINTS E-class P450 group I signature 304 321 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo04g01876 511 PRINTS E-class P450 group I signature 324 350 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo04g01876 511 PRINTS E-class P450 group I signature 189 207 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo04g01876 511 PRINTS E-class P450 group I signature 366 384 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo04g01876 511 PRINTS E-class P450 group I signature 407 431 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo04g01876 511 PRINTS E-class P450 group I signature 453 476 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo04g01876 511 PRINTS E-class P450 group I signature 71 90 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo04g01876 511 PANTHER CYTOCHROME P450 71B16-RELATED 15 509 - -
Cmo04g01876 511 Gene3D Cytochrome P450 28 504 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo04g01876 511 PANTHER CYTOCHROME P450 71B11-RELATED 15 509 - -
Cmo04g01876 511 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 446 455 IPR017972 GO:0005506|GO:0016705
Cmo04g01876 511 PRINTS P450 superfamily signature 444 453 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo04g01876 511 PRINTS P450 superfamily signature 315 332 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo04g01876 511 PRINTS P450 superfamily signature 367 378 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo04g01876 511 SUPERFAMILY Cytochrome P450 44 508 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01876 Cmo-Chr4:9446496 Cmo04g01878 Cmo-Chr4:9497654 0 dispersed
Cmo04g01874 Cmo-Chr4:9435477 Cmo04g01876 Cmo-Chr4:9446496 0 proximal
Cmo04g01876 Cmo-Chr4:9446496 Cmo04g01877 Cmo-Chr4:9459183 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g01876 - - cmos:111458142 861.292