Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g01878 ATGCTTAGAGTTGATACAATGATGCCTAGTAATGATTTTTTCATCTGGGTTCCTCTGCTTTTCCTCTGTTCTTCTCTATTGCTTCTTAAAATCATAAGAAAACAGGCAAAACCCAACAACAAGCTTCTTCCTCCCACCCCTCCAAAGCTTCCTTTGTTGGGCCATCTGCACCTCATTGGCTCCCTCCCCCATCGCTCTCTCTCTCAGCTTTCAAAAAAATATGGCCCCGTCATGCTCCTCCAATTGGGCTCTGTCCCAACCATCGTGATCTCCTCTGCCGCTGCTGCAAGAGAGCTGTTTAAATTTCATGACCTTGCTTCTTGCAGCCGCCCTCGCTTAACGGGTAGTGGAAGATTTTCATACAACTTCGTGGACCTAAATCTATCACCGTACGGTGAACGTTGGAGGGAACTTCGGAAGATTTGTATGCTTGAGCTCTTCAATGCTAGGCGGGTACAATGTTTTCAGGAAATTAGAGAAGAGGAAGTGGGGCGCCTTCTAAACTCCATCTCTCAATCCTCATCTTCTTCAACTCCAATTAATCTGAGGGACAAATCCTATTCTCTCACTGCAAATATAACATCAAGAGTTGCTTTTGGCAGCATCTTCAGCGGAGGAAAATTAGATGATGAACACTTTCAACATCTTATGAGGAGAGCAGTTGCAGCAATCGGGAGCTTCTCGATGACCGACTTCTTTCCTACTTTCGGTTGGATTATTGATCGGATAAATGGTGTTCATGGGAGGCTGGAGAAGAGCTTTGGTGAGATGGATGCCTTTTTTCAACATGTGGTCGACAATCGCATCAACTTCAAGGAGAGTTCTAAGAAGGAAGAAAACATTGTTGATGTTTTGTTGAGAATGGAGAGGGAAAGCTCTGAATCTGATGTGCTACAAGTCACCCAAGATTGCGTTAAAGCACTCATCATGGATATTTTTCTAGCTGGAGTAGAAACTGGAGCAAGCACCATTGTTTGGGCTATGACAGAGTTGGTTAGGAGCCCAAACGTGATGAAGAAGCTCCAAGATGAGATTAGAAGTTGTATAAAAGAAGATTCAGTGAAAGAGATAGACTTGGAAAAGCTTGAGTATCTAAAAATGGTAGTGAAAGAGGTTCTGAGATTGCATCCACCAGCCTCACTTCTACTTCCACGAGAAACCATCTCCCCTTTTAAGCTCAACGGTTACGATATCGACTCCAAGGCTCATCTTCACATCAATGTGTGGGCCATTGGACGAGACCCACAATCTTGGACTGACCCAGAAGAGTTCTTTCCAGAGAGGTTTATAGGAAGCAATATCGATTACAAAGGACAGAACTTCGAGTTAATACCGTTTGGAAGCGGCCGAAGAATATGTCCTGGGATGAATATGGGTACCCTTACGGTGGAGTTGGCACTGGCTAACCTCTTGTTGTGCTTTGATTGGAAACTCCCAGATGGAATGAAGGAAGAAGATGTGGATATGGAAGAGGAAGCTGGTCTTGCCATTACCAAAAAATCACCCCTTATACTTGTTCCAACCCTTTCAACTAAAAATTAG 1542 43.97 MLRVDTMMPSNDFFIWVPLLFLCSSLLLLKIIRKQAKPNNKLLPPTPPKLPLLGHLHLIGSLPHRSLSQLSKKYGPVMLLQLGSVPTIVISSAAAARELFKFHDLASCSRPRLTGSGRFSYNFVDLNLSPYGERWRELRKICMLELFNARRVQCFQEIREEEVGRLLNSISQSSSSSTPINLRDKSYSLTANITSRVAFGSIFSGGKLDDEHFQHLMRRAVAAIGSFSMTDFFPTFGWIIDRINGVHGRLEKSFGEMDAFFQHVVDNRINFKESSKKEENIVDVLLRMERESSESDVLQVTQDCVKALIMDIFLAGVETGASTIVWAMTELVRSPNVMKKLQDEIRSCIKEDSVKEIDLEKLEYLKMVVKEVLRLHPPASLLLPRETISPFKLNGYDIDSKAHLHINVWAIGRDPQSWTDPEEFFPERFIGSNIDYKGQNFELIPFGSGRRICPGMNMGTLTVELALANLLLCFDWKLPDGMKEEDVDMEEEAGLAITKKSPLILVPTLSTKN 513
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 9497654 9499592 - CmoCh04G018780.1 Cmo04g01878 380853
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g01878 513 Gene3D Cytochrome P450 28 505 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo04g01878 513 PANTHER CYTOCHROME P450 71B16-RELATED 15 510 - -
Cmo04g01878 513 Pfam Cytochrome P450 44 502 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo04g01878 513 PANTHER CYTOCHROME P450 71B11-RELATED 15 510 - -
Cmo04g01878 513 PRINTS E-class P450 group I signature 366 384 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo04g01878 513 PRINTS E-class P450 group I signature 443 453 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo04g01878 513 PRINTS E-class P450 group I signature 189 207 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo04g01878 513 PRINTS E-class P450 group I signature 304 321 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo04g01878 513 PRINTS E-class P450 group I signature 71 90 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo04g01878 513 PRINTS E-class P450 group I signature 407 431 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo04g01878 513 PRINTS E-class P450 group I signature 324 350 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo04g01878 513 PRINTS E-class P450 group I signature 453 476 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo04g01878 513 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 446 455 IPR017972 GO:0005506|GO:0016705
Cmo04g01878 513 PRINTS P450 superfamily signature 315 332 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo04g01878 513 PRINTS P450 superfamily signature 367 378 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo04g01878 513 PRINTS P450 superfamily signature 444 453 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo04g01878 513 SUPERFAMILY Cytochrome P450 44 507 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01871 Cmo-Chr4:9396331 Cmo04g01878 Cmo-Chr4:9497654 0 dispersed
Cmo04g01874 Cmo-Chr4:9435477 Cmo04g01878 Cmo-Chr4:9497654 0 dispersed
Cmo04g01876 Cmo-Chr4:9446496 Cmo04g01878 Cmo-Chr4:9497654 0 dispersed
Cmo04g01878 Cmo-Chr4:9497654 Cmo04g01884 Cmo-Chr4:9593257 0 dispersed
Cmo04g01882 Cmo-Chr4:9550987 Cmo04g01878 Cmo-Chr4:9497654 0 dispersed
Cmo18g00751 Cmo-Chr18:9185496 Cmo04g01878 Cmo-Chr4:9497654 6.27E-172 dispersed
Cmo18g00753 Cmo-Chr18:9190173 Cmo04g01878 Cmo-Chr4:9497654 0 dispersed
Cmo04g01877 Cmo-Chr4:9459183 Cmo04g01878 Cmo-Chr4:9497654 0 tandem
Cmo04g01878 Cmo-Chr4:9497654 Cmo04g01879 Cmo-Chr4:9511256 4.15E-18 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g01878 - K01773 cmos:111458142 850.121