Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g01880 ATGCTCCTCCAACTCGGCTCTGTCCCAACCATCGTAATCTCCTCTGCCGCCGCTGCAAGAGAGTTGTTCAAATTTCACGACCTTGCTTCTTGCAGCCGACCTCCCTTACACGCCAACGGAAGACTTTCGTACAATTATCTTGACATGAGTCTCACTCCATACGGTGAACACTGGAGGAACGTCCGAAAGATTTGTATGCTTGAGCTCTTCAGTGCTCAGCGGGTTCAATCTTTTCAGGAAATTAGAGAAGAGGAAGTGGGGCGCCTTGTAAAATCCATCTCTCAATCCTCTTCTTCTTCATCTCCAATTGATGTGAGTGACAAATCCTATTCTCTCACTGCAAATATAATAACAAGAGTTGCTTTCGGAAGCATCTTCAGCGGAGGAAAACTAGATGATGAACACTTTCAACATGTTGTCCGGAGAGCAGTTGCAGCAATTGGAAGCTTCTCGATGACCGATTTCTTTCCTACTTTCGGTTGGATTATTGATAGGTTAAATGGTGTTCATGGGAGGCTGGAGAAGAGCTTTGGTGTGCTGGATGCGTTTTTTCAAAGTGTAGTCGACAATCGCATCAACTTCAAGGAGATTTCTAAAAATGAAGAAAACATTGTTGATGTTTTGTTGAGAATGGAGAGGGAAAGCTCTGAATCTGATGCACTAAAAGTCACCCAAGATTGCATCAAAGCACTCATCAAGGATATTTTTCTAGCGGGAGTAGAAACTGGAGCAGGCACAATTGTTTGGGCCATGGCAGAGTTGGTTAGGAACCCAAGGGTGATGAAGAAACTCCAAGACGAGATCAGAAGTGGCATAAAAGAAGATTCAGTGAAAGAGATCGACCTAGAAAAGCTTGAGTATCTAAAAATGGTAGTGAAAGAGGTTATGAGATTGCATCCACCCGCCCCTCTTCTACTCCCAAGAGAAACCATCTCCCCTTTTAAACTCAACGGTTACGATATTGAACCCAAGGCTCATCTTCACATTAATGTGTGGGCCATCGGACGAGACCCACAATATTGGACTAACCCAGAAGAGTTCTTTCCTGAGAGGTTTATAGGAAGCAATATCGATTACAAAGGACAAAACTTCGAGTTATTACCTTTCGGAGGTGGTCGAAGAATATGTCCTGGAATAAACATGGCTACCCTTACGGTGGAGTTAGCTCTGGCTAACCTATTGTTGTGTTTTGATTGGAAACTTCCCGATGAAATGAAGGAAGAAGATGTAGATATGGAAGAGGATGTTGGTCTTACTGTTGCCCAGAAATCACCTCTTCAACTTATTCCCGCTCTTTCAACTAATTTTTAG 1311 43.33 MLLQLGSVPTIVISSAAAARELFKFHDLASCSRPPLHANGRLSYNYLDMSLTPYGEHWRNVRKICMLELFSAQRVQSFQEIREEEVGRLVKSISQSSSSSSPIDVSDKSYSLTANIITRVAFGSIFSGGKLDDEHFQHVVRRAVAAIGSFSMTDFFPTFGWIIDRLNGVHGRLEKSFGVLDAFFQSVVDNRINFKEISKNEENIVDVLLRMERESSESDALKVTQDCIKALIKDIFLAGVETGAGTIVWAMAELVRNPRVMKKLQDEIRSGIKEDSVKEIDLEKLEYLKMVVKEVMRLHPPAPLLLPRETISPFKLNGYDIEPKAHLHINVWAIGRDPQYWTNPEEFFPERFIGSNIDYKGQNFELLPFGGGRRICPGINMATLTVELALANLLLCFDWKLPDEMKEEDVDMEEDVGLTVAQKSPLQLIPALSTNF 436
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 9530369 9532117 - CmoCh04G018800.1 Cmo04g01880 380855
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g01880 436 PRINTS E-class P450 group I signature 366 376 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo04g01880 436 PRINTS E-class P450 group I signature 112 130 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo04g01880 436 PRINTS E-class P450 group I signature 376 399 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo04g01880 436 PRINTS E-class P450 group I signature 227 244 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo04g01880 436 PRINTS E-class P450 group I signature 247 273 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo04g01880 436 PRINTS E-class P450 group I signature 330 354 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo04g01880 436 PRINTS E-class P450 group I signature 289 307 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo04g01880 436 Pfam Cytochrome P450 3 419 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo04g01880 436 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 369 378 IPR017972 GO:0005506|GO:0016705
Cmo04g01880 436 PRINTS P450 superfamily signature 367 376 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo04g01880 436 PRINTS P450 superfamily signature 376 387 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo04g01880 436 PRINTS P450 superfamily signature 290 301 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo04g01880 436 PRINTS P450 superfamily signature 238 255 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo04g01880 436 Gene3D Cytochrome P450 1 430 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo04g01880 436 PANTHER CYTOCHROME P450 71B11-RELATED 1 432 - -
Cmo04g01880 436 PANTHER CYTOCHROME P450 71B16-RELATED 1 432 - -
Cmo04g01880 436 SUPERFAMILY Cytochrome P450 2 429 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01877 Cmo-Chr4:9459183 Cmo04g01880 Cmo-Chr4:9530369 0 dispersed
Cmo04g01880 Cmo-Chr4:9530369 Cmo04g01886 Cmo-Chr4:9602105 0 dispersed
Cmo04g01879 Cmo-Chr4:9511256 Cmo04g01880 Cmo-Chr4:9530369 1.24E-15 tandem
Cmo04g01880 Cmo-Chr4:9530369 Cmo04g01881 Cmo-Chr4:9548658 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g01880 - - cmos:111458142 696.041