Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g01901 ATGGTTACTCGGAACCATTCTGTGACCAAATATGTGACCATCCACCACCACCAAGGGATTTCCTTCATGTGTTGGTATTTGTATCATGCTCAGAAGGGTAATTCTCTGTCCAAATTTGGTGAGTGGGATGAAAAACATCCTGCTCCAGCTGAAGGGATCACAGTGATCTTCAACAGGGCACGAGTTAATAGTAAGAAAGAAGGAGGAACTCCAACAAATATGAAGCTGCCAAGAAGAAAGAAGAAAGGATGGCATTGGCACTGCTGCTTTTGTAGCAAAATGGCGCTTTGTGCCGTCGAAGGTGGCTGCCCCAGCGATTACGTCGCGATAGCTTTTGCTGCTCTTTGTATGACTTTGCTGATATTTCGATCGATATTACCATACGTGATTTATAAAATTCCTCTTCCCAAAGGCAGCCGTTTTTGGATTCCAGTAATTCAAGTTTTTGCTAGCCTCAATCTTCTGCTGTCAATTGTGATATCTCTAAGTTTCCTCAAGTTAAAGAGGCGAAGGTGGCGGTCTTGCTATATTTGGGCAGTGTGGATTGAAGGTCCCCTTGGATTTGGTTTGCTGTTGAGCAGTCGCATAACACAGACCTTCCAACTATATTACATTTTTGTAAAGCGTCGTCTACCACCCGTCAAAACATACATCTTCCTTCCACTTATTCTATTGCCATGGATTTCCGGGGCTACATTTATCAATGTCAAGAAGCCTCTAAATTACAGGTGTCACATGCGTCCTCAGTGGATTGCTCCAATCATGTCTCTCCATATCCTATATGTTGCCACTTTAATTGTACTTACATGGGCTGTTCGTCACATAGAGTTCAGGTTTGATGAACTTAGAGATCTGTGGAAGGGAGTAATAGTCTCAGCATCTTCTATTGGAGTTTGGCTTTCTGCCTATATTACGAATGAAATCCATGAAGAGATCTTAGGACTCCAAGTTGCCTCTAGATTTCTGCTATTAGTCACGGCAAGTATTCTTGTGCTGACCTTCTTCTCTATATCAAGCTCACAACCGCTGCTTTCTCAAATCAGTTTGAGAAAAAGGGAAAGCCTTGAGTATGACTCAATGGGTCAGGCTCTGGGCATACCAGATAGTGGATTGTTACTACAAAGGGAACCAGAAACAGTCATGGATCCTAATGAACCACTAGAGAAATTACTTCTGAACAAAAGATTTCGTCAGTCATTCATGGCTTTTGCTGACAGTTGCTTAGCTGGGGAGAACGTGCACTTTTATGACGAAGTGCATGAGCTAGGAAAACTGCCTCTGGATGACCCTGTGAGAAGAATCTATATGGCAAGACATATAATTGACAACTACATAAGTCCAGGTGCAACAATGGAGGTGAACATTTCTCACCGATGCCGTCAAGAGATTTTGACGACTTCTGATCTGGCTGATCCCAATCTCTTTAATAACGCACTAAATGAGCTGATACAGTTGATAAAGATGAATTTGGCAAAAGATTTCTGGTCGTCAATGTTCTTTCTGAAGTTAAAAGAAGAAACGAGTATGAGATCAAATGGGCGAGAGATTGAACAGATAACGAGTTGGAACCTCTCTCCTAGACTGAGTTCTGTACAAGGCGCTGATGATCCTTTCCACCAAGAGCAATGCCCAAAGGGCGCTGGCCATGATAGTACTCACTACTCGGACCACTAA 1674 42.77 MVTRNHSVTKYVTIHHHQGISFMCWYLYHAQKGNSLSKFGEWDEKHPAPAEGITVIFNRARVNSKKEGGTPTNMKLPRRKKKGWHWHCCFCSKMALCAVEGGCPSDYVAIAFAALCMTLLIFRSILPYVIYKIPLPKGSRFWIPVIQVFASLNLLLSIVISLSFLKLKRRRWRSCYIWAVWIEGPLGFGLLLSSRITQTFQLYYIFVKRRLPPVKTYIFLPLILLPWISGATFINVKKPLNYRCHMRPQWIAPIMSLHILYVATLIVLTWAVRHIEFRFDELRDLWKGVIVSASSIGVWLSAYITNEIHEEILGLQVASRFLLLVTASILVLTFFSISSSQPLLSQISLRKRESLEYDSMGQALGIPDSGLLLQREPETVMDPNEPLEKLLLNKRFRQSFMAFADSCLAGENVHFYDEVHELGKLPLDDPVRRIYMARHIIDNYISPGATMEVNISHRCRQEILTTSDLADPNLFNNALNELIQLIKMNLAKDFWSSMFFLKLKEETSMRSNGREIEQITSWNLSPRLSSVQGADDPFHQEQCPKGAGHDSTHYSDH 557
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 9684342 9691377 - CmoCh04G019010.1 Cmo04g01901 380876

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g01901 557 MobiDBLite consensus disorder prediction 530 557 - -
Cmo04g01901 557 Pfam Regulator of G protein signaling domain 387 503 IPR016137 -
Cmo04g01901 557 PANTHER REGULATOR OF G PROTEIN SIGNALING 197 515 - -
Cmo04g01901 557 SMART RGS_3 386 504 IPR016137 -
Cmo04g01901 557 PANTHER DOUBLE HIT, ISOFORM B 197 515 - -
Cmo04g01901 557 ProSiteProfiles RGS domain profile. 386 504 IPR016137 -
Cmo04g01901 557 SUPERFAMILY Regulator of G-protein signaling, RGS 377 505 IPR036305 -
Cmo04g01901 557 Pfam Cleavage site for pathogenic type III effector avirulence factor Avr 31 61 IPR008700 -
Cmo04g01901 557 Gene3D - 374 515 IPR044926 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g01901 - - - csv:101218119 842.032
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01901 Cmo-Chr4:9684342 Cmo06g00680 Cmo-Chr6:3439570 3.34E-10 dispersed
Cmo04g01901 Cmo-Chr4:9684342 Cmo16g00996 Cmo-Chr16:6867739 7.85E-12 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1112 . . . . . Bpe10g00771 . Bma15g00251 Cmo04g01901 . . . . . Sed04g0545 . Cpe01g01586 Bhi07g01847 Tan04g0120 Cmetu10g0423 . Hepe10g1556 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cma04g01801 . Car04g01814 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012781 2 1 0 1 1 1 1 1 0 1 0 1 1 1 1 1 1 2 1 1 1 1 1 1 1 0 1 1 1 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo04g01901 Cmo_Chr04 FPKM 25.700748 27.447435 25.934238 29.689302 30.613525 31.173193 30.420908 61.344299 59.798561 57.518291