Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g01902 ATGTCTGAGAATCATGATCCAGAGCCGGCACTGCAGAGTTCAGGAAATGGAGCTGAAGGGGTGGAAACTGTGCTCAATGTTAATGTTGGGGAGTCATCTTCTGAGACTGCCGCGGACGCTACTTCGGAGAATGACTCCGTTTTGCAGTCCTCTGAAGTGTCCAGTGGATTTTCCCCTTCTGTGCCGAACCAGGGATCAACATTGTCGCCAGTGGCTCCTCTTACTGAAGGTGGAGAGAACTCGGGACAAGATGACCCTGATGGTACTGTAGTAGTCGAAGATGCTGGAAAACACGATATGTTTGTGGACTGCCCGGACGAGTTAGCTGGCAATGCTGATGGCAAAGAAGTAGTTGCAGCTACTGAAACTCAAGGTAGTTTGATGGAGGAAACGCCTTCTGATATGCAACAGGAAATACAATATGAGATAGAAAAGGTTTCTCTGATGGACGAGGTGGAAAACACGAGGGCCACTCTGAATGGGACCATTTTCGAGAAAGAAAATGTCATACACGATTCTGAGAAAGAAAGAGAAGCTTTTGTGCAAGAACTTCTTATCATTTGTGGCCAACTCAAGACTGCTACTAATCGACAGTCATTGGTCAAAGTTACTGGCAATCAGTTGAATGAGAGTCTTGATTTGCGTGGAATTGAGCACGTGGAAGAGAACACTCTGATTTCTAATACCACATTGAAAGACTTGGTAAATGAATGCTCACAATTGGTTAATAGGACTTTAGATGAACGATTGCAGTATGAGGCTACTATAGGAGAACTCCGTCATAATCATTTAGTAAAGGATCAAGACATTGAGTATCTTAATGCAAAAGTTGTTGAATATATGGTGTCTGATGAAGTTGTTCGCTCTTACACAAATTCAATTGAAGATTCTATGAAAGTTTCGTCTGAAAAGGAGTGGGAAATGGAAGCCACATTAGATAGAGTGTTAACGTCTCTCAACTCGGTATTGAATCAGCAACATCTTCTTGACGATTCTTTATCAGAAAAAACACTTCGTGTTGAAAGAAATACTTCTCTGTTAATTGATAATTATAACAAAATCCTTCTGAAAATTAATCAACTCCAATCATGTTTAACTGGGGCAGAGTCAGACATCATCTCCACTGAAGCTGGAGCAATTTTGGCCACTGCCCATACTGAGTTAATTGAGCTCAAAGCTAAAGAGGTCAGCAATGCTGAAAAAATGTATCATCTGGAAGATGAAAATAGAAGATTGGCAGATGAGATAGACAATTACAGATTGACAGTTGAGACTGTTAATGGTGAACTTGAAAAGGCAAAAAGTGAGCTGGAGCAAGAAAGGATAAGGTGTGTTAATACCAAAGAGAAGTTAACAATGGCTGTGACAAAAGGCAAGGCATTAGTACAGCAACGTGATGCATTGAAACAGTCTCTAGCTGAAAAAAGTCGGGAGCTTGAAAAGTATTCTGTCGAACTACAAGAGAAATCAAATGCTTTGGAGACTGCTGAACTAATTAAGGTTGACTTGGCTAAAAGTGAAACTTTAGTTGCATCACTTCAGGAAAATCTGTTGCAAAGGAATATGGTCCTCGAAAGTTTTGAGGATGTTATATCTCAAATTGAAGTTCCTCGGGAACTTAAATCAATGGACAGTATGCAAAGACTCAAGTGTCTTGTGGATGAGAAGAAAGTTCTGGAGGCTATTTTATTGGAGTTTCAGAAGTTAAAAGATACTGTAAACTTATCTGATTGGCCGGATTTGATTGCACCTTATGACCTGAAATCTTCCGTCTGTTGGCTTAAGGAATCATTTTTTCAGGCTAAAGATGAAATAATGGTTTTGCAAGACGAACTTGCTAAAACTAAAGATGCAGCACAAGGAGAGATTGATTGCATAAGTGCTTTACTTTTAATTAAATTACAGGAAACGGACTATCTCCAGGAGCAGTTGGATGACCTTTTAAGCAAATATGAAGAAGTCAAGATAAAAATGCATCAGACATCGTTGGAGAAGGCTCAACTCATAAACATGTTACAAGAAGAATCTGGAGTGACAACAGATGATGGAGGGGTCAGTGAAACTTCGTTGGACTTGAACTTGCTTGTTTACAGATGCTTTCAGAGGATAAAGGAGCAGGCTCGTGCATCTGCTGAAATCTCAGGTGAATATGTGGAATGTTTTGAAAAGGTTCAAGCTCTTTTATATGTCAGTCGTCAGGATTTGACGCTCTATGATATAATTCTAGAAGAGGAGTCTTCTGATTTGAGTAATTGCTCGAGTAGGTTAAGATCAGTATCTCAAGAACTTAGAGAAGCGAAAGAGGAAAATGACTCTTTGCAGAGGGATTTTCAAAGATTAGAGGAGAAATATGCCTTGCTAAGGGAAAAGTTGTCCTTGGCTTTTAAGAAAGGCAAAGGACTGGTTCAGGATAGGGAAAATATGAAAAGTGTCTTGGATGACAAGAACATAGAAATAGAGAAGTTGAAACTACAATTAGATAGTCTAGAGTCGACAGTTACTAATTGCAGAAATCAAATCAATTTGTTGTCTATTGATACACAACGCATTCCGGAGTTGGAGTCTGAACTTGGCATCTTGGAGGACAAATGTAATCAATACGGGCAGTTCTTGTTGGAGAGCAATGATATGTTACAGAAAGTAAATGAATCAATTGATGGAATTGTTCTTCCCATTAATATGGTTTTTGAAGAGCCTATAGCTAAGGTGAAGTGGATTGCAGATTACATTAGGGAATCTCATGATGCTAAGATACGTACGGAACAAGAATTGGAGAACGTTAAAGAGGAGTCGAGTACTATGGAAATTAAATTAGGAGATGCCTTAGCTGCTATGAAATCATTGGAAAATGCATTATCATCTGCTGAGAACAACATTTTTCAGCTTTCTGAGGAGAAAAGGGAAATAGAATCTAGTAAGATACATATTGAACAGGAATTAGAGAAAACATTAAATGAAGCCTATTCACAGTCCAGCAAGTTTGCGGAAGCTTCATTGTCTCTGAAGCTACTTCAAGAGTCGTTATCACTGGCAGAAAATAAAGTATCTGTGCTTGTCAGAGAGAAAGAAGAAGCTGAAGTTTGTAAACTCAATGCAGAGATAGAGTCTAAGAAAGTAAAGGAGGAAGTGGCTGTCCAGACAGATAAATTGGTAGAGGCCCAAGGAATTATAAACACATTAGAAAAGAATTTAACTGAGCTTGAGACCAATGTTGCTTTACTAACGGAACAGAATGCTGAAGCACAAAGTGGTATAGAGAAGCTAGAGACAGAACGGAAGGTATTGCAAGAGGAAGTCAGTTCTCAAGCAAGAAAAGTTGTTGAGGCGACAGAAATAAGAAAATCTTTGGAAGATTCATTATTTAAGGCAGAAAGTAAAATTTCTATAATTGAAGGTGAGAGGAGAAATTCTGAAAATGAGATATTTGCTCTAAATTCCAAATTAAATACATGCATGGAAGAGTTGGTTGGGACTAATGGCAGCTTACAGAGCAGATCTGCAGAGTTTGCGGGCTACCTCAATGATCTTCACAAGTTTGTTGCAGATGAGACATTGTTGACCGTGGTGACAGGATGCTTTGAGAAGAAACTTAAGAGTCTAAGAGAGATGGATATCATTTTGAAGAACACCAAGGATTGTCTAGTTAACAGTGGCATAATAGATTCTCATGATCACCATGCTGTTCAGGATCTGAATGTTAAGGAATCCCTTTCTCATGGAAAGCTCCTTGATTTTGCTGTTGAAAATGAAAGTGATAAGGTGGTTGTTGAAGATGATGTTGGTAATATTTCATTATCTTTTAGAAAGATTATGGAAGAAATCTGGTTAAAGAACAAGAAGTTCACAGATTATTTTGAAGGTATCTCCTCTTCAATGGATGGGTCTATTGCTGATCTGTTAAAACAAGTGGAAGCAACAAGAGAGGAAGTAGTTTTTGTGTGCGGACACGTTGAATCCTTGAAAGAGATGGTGAAGAATCTCGAAATGCATAAACAGGAACAAGAATATACCAAAGTGATGCTAGAAGATGATGTTTCCCTTCTATTGTCTGCCTGTATTGACACAACAAAAGAGCTTCAGTTTGAAATGACCAACCATCTACTTCTACTCAGCTCTATTCCCGAACTTGACAACTTGAAGGATACCATATCCATGGAAAGTAGTGAGACTAGTGGAGCTTCACCTGCAGAGTCTCGAGCAAAATCATCTAGTAGCAAATCAGCTTCCGCTGCAGAACAATTATTATCTGCTAGCAGAAAAGTTAAATCTATAGTTAAACAGTTTGAGAGCACCAGCAAGGTTGCAGCTTGTAGAATTCAAGATATGCAGCATATATTGGAAATAACTGAGGCAACTACTAAGAAAATTAGAAAGGAAAAGGACTTCAACCAGAATATGGTAGTTAAGTTGGAGACTGATTTACAACTATTGCAGAGTTCCTATGTTGAACTTAGTCGTCAACTGGAGACTTGTCAAGCAAATAAAGAAAAGTTAAAAGAAAGGGAGGCTGAAGTTTCATCATTGTATAATAGTTTGTTGGTGAAAGAACAAGAGGCAGAAGGCTGCGTTTTGTCAACTATGCAAATGGAAGCTCTCTTTAAGAAGGTTAGAGGGATTGGGATCTCTTTGCCAGAGTCAGAATACCTAGATGTGGAACAATATGATTCAACTGATGTAAAGACGCTCTTTTACCTTGCTGATTATGTTTCTGAGTTACAGAATCAGTTCAACTTACTATCTCATGACAAGCAAAAGCTGCAGTCTACAGTGACCACACAAATAATTGCAATTGAACAGCTGAAAGAGGAGGTTGATAGAGCATCGAGGTATCAACTTGATTCAGAGGAGATGAAGAAAGATCTCTCAGAGCTTTCTTATTCTTTAGAACAAATTATTAGTTTGTTGGATAGTAACTTCAGTGGAGATTCAAAGTCAGAAGGCTTGAAGGGACTAGTAAGAATACTAGAGAGGCAGATTCTGGATATGCTCTCCGAATCTGAAAAGTCAAAAATCAAATTTGAGGAATTGAGTGGGAAGTTAATAGGGAGCCAAAACGTCGTGGATGAACTAACTACTAAGAATAAGCTACTTGAAGAGTCACTTCAAGGACGGACATCTCAACCAGAGATGATCAAAGAAAGGAGCGTCTTTGGAGCACCTTCTTTTCCTTCTGAATCAGAGATATCAGAGATTGAAGATGCAGGACCAGCTGGGAAAAGTGCAATACCACCTGCTTCATCAGCCTCAGCTGCCCATGCTCGAACTTTGCGGAAAGGTTCAACTGATCATCTTGCGATTGACGTAGAAACAGAATCTGTTCATTTAATAGGAAATGGCATGGAAATTGATGAAGACAAAGTTTCAAAACTTGGAGAATTTACGCATGTCCTTTTTCAGGTCATGTGTTCAAATCACTCAATGCATCAGGTCTCATCCCAAGGCATGGAAAACTTATTGCCGATCGAATTGATGGAATTTGGTAAGTGCTAA 5490 38.94 MSENHDPEPALQSSGNGAEGVETVLNVNVGESSSETAADATSENDSVLQSSEVSSGFSPSVPNQGSTLSPVAPLTEGGENSGQDDPDGTVVVEDAGKHDMFVDCPDELAGNADGKEVVAATETQGSLMEETPSDMQQEIQYEIEKVSLMDEVENTRATLNGTIFEKENVIHDSEKEREAFVQELLIICGQLKTATNRQSLVKVTGNQLNESLDLRGIEHVEENTLISNTTLKDLVNECSQLVNRTLDERLQYEATIGELRHNHLVKDQDIEYLNAKVVEYMVSDEVVRSYTNSIEDSMKVSSEKEWEMEATLDRVLTSLNSVLNQQHLLDDSLSEKTLRVERNTSLLIDNYNKILLKINQLQSCLTGAESDIISTEAGAILATAHTELIELKAKEVSNAEKMYHLEDENRRLADEIDNYRLTVETVNGELEKAKSELEQERIRCVNTKEKLTMAVTKGKALVQQRDALKQSLAEKSRELEKYSVELQEKSNALETAELIKVDLAKSETLVASLQENLLQRNMVLESFEDVISQIEVPRELKSMDSMQRLKCLVDEKKVLEAILLEFQKLKDTVNLSDWPDLIAPYDLKSSVCWLKESFFQAKDEIMVLQDELAKTKDAAQGEIDCISALLLIKLQETDYLQEQLDDLLSKYEEVKIKMHQTSLEKAQLINMLQEESGVTTDDGGVSETSLDLNLLVYRCFQRIKEQARASAEISGEYVECFEKVQALLYVSRQDLTLYDIILEEESSDLSNCSSRLRSVSQELREAKEENDSLQRDFQRLEEKYALLREKLSLAFKKGKGLVQDRENMKSVLDDKNIEIEKLKLQLDSLESTVTNCRNQINLLSIDTQRIPELESELGILEDKCNQYGQFLLESNDMLQKVNESIDGIVLPINMVFEEPIAKVKWIADYIRESHDAKIRTEQELENVKEESSTMEIKLGDALAAMKSLENALSSAENNIFQLSEEKREIESSKIHIEQELEKTLNEAYSQSSKFAEASLSLKLLQESLSLAENKVSVLVREKEEAEVCKLNAEIESKKVKEEVAVQTDKLVEAQGIINTLEKNLTELETNVALLTEQNAEAQSGIEKLETERKVLQEEVSSQARKVVEATEIRKSLEDSLFKAESKISIIEGERRNSENEIFALNSKLNTCMEELVGTNGSLQSRSAEFAGYLNDLHKFVADETLLTVVTGCFEKKLKSLREMDIILKNTKDCLVNSGIIDSHDHHAVQDLNVKESLSHGKLLDFAVENESDKVVVEDDVGNISLSFRKIMEEIWLKNKKFTDYFEGISSSMDGSIADLLKQVEATREEVVFVCGHVESLKEMVKNLEMHKQEQEYTKVMLEDDVSLLLSACIDTTKELQFEMTNHLLLLSSIPELDNLKDTISMESSETSGASPAESRAKSSSSKSASAAEQLLSASRKVKSIVKQFESTSKVAACRIQDMQHILEITEATTKKIRKEKDFNQNMVVKLETDLQLLQSSYVELSRQLETCQANKEKLKEREAEVSSLYNSLLVKEQEAEGCVLSTMQMEALFKKVRGIGISLPESEYLDVEQYDSTDVKTLFYLADYVSELQNQFNLLSHDKQKLQSTVTTQIIAIEQLKEEVDRASRYQLDSEEMKKDLSELSYSLEQIISLLDSNFSGDSKSEGLKGLVRILERQILDMLSESEKSKIKFEELSGKLIGSQNVVDELTTKNKLLEESLQGRTSQPEMIKERSVFGAPSFPSESEISEIEDAGPAGKSAIPPASSASAAHARTLRKGSTDHLAIDVETESVHLIGNGMEIDEDKVSKLGEFTHVLFQVMCSNHSMHQVSSQGMENLLPIELMEFGKC 1829
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 9691913 9698393 - CmoCh04G019020.1 Cmo04g01902 380877

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g01902 1829 MobiDBLite consensus disorder prediction 1385 1407 - -
Cmo04g01902 1829 Coils Coil 1467 1501 - -
Cmo04g01902 1829 PANTHER - 75 973 - -
Cmo04g01902 1829 PANTHER - 1142 1786 - -
Cmo04g01902 1829 Coils Coil 1569 1603 - -
Cmo04g01902 1829 SUPERFAMILY Tropomyosin 921 1178 - -
Cmo04g01902 1829 MobiDBLite consensus disorder prediction 1719 1748 - -
Cmo04g01902 1829 Coils Coil 1317 1337 - -
Cmo04g01902 1829 Coils Coil 910 986 - -
Cmo04g01902 1829 Coils Coil 749 797 - -
Cmo04g01902 1829 PANTHER BNAA09G28150D PROTEIN 1142 1786 - -
Cmo04g01902 1829 Coils Coil 805 839 - -
Cmo04g01902 1829 Coils Coil 1050 1105 - -
Cmo04g01902 1829 Coils Coil 402 450 - -
Cmo04g01902 1829 PANTHER - 971 1027 - -
Cmo04g01902 1829 Coils Coil 465 499 - -
Cmo04g01902 1829 Coils Coil 1001 1021 - -
Cmo04g01902 1829 MobiDBLite consensus disorder prediction 1 91 - -
Cmo04g01902 1829 MobiDBLite consensus disorder prediction 1 76 - -
Cmo04g01902 1829 PANTHER BNAA09G28150D PROTEIN 971 1027 - -
Cmo04g01902 1829 PANTHER BNAA09G28150D PROTEIN 75 973 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g01902 - - - csv:101218359 2565.42
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo04g01902 Cmo18g00713 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01902 Cmo-Chr4:9691913 Cmo09g00521 Cmo-Chr9:2429676 7.53E-11 dispersed
Cmo18g00713 Cmo-Chr18:8955919 Cmo04g01902 Cmo-Chr4:9691913 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1114 . . . . . . . . Cmo04g01902 Cmo18g00713 . Cma18g00726 . Car18g00674 Sed06g1718 Cpe09g00563 Cpe01g01587 Bhi07g01850 Tan04g0116 Cmetu10g1236 Lac13g0100 Hepe10g1555 . . Cla05g02625 Cam05g2815 Cec05g2851 Cco05g2882 Clacu05g2819 Cmu05g2667 Cre05g2783 . . Cone8ag0714 . Lsi04g00640 . . . . Blo11g00999 . . . . . . . . . Cma04g01803 . Car04g01816 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004326 1 1 1 1 1 1 2 1 1 1 1 1 3 1 1 2 1 1 2 1 1 1 1 1 1 1 1 4 5 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo04g01902 Cmo_Chr04 FPKM 1.541924 1.868548 5.170392 6.343444 6.507221 5.989042 5.974785 21.763016 20.495222 22.252197