Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g01903 ATGGGTTTTCTTCGTTTTTTGGCTTTGATTCTTCTCGTCGTTTCTTCTGTTCATTGTCAAGTTAAAGAGTTTATCAGTATAGACTGTGGAGCGACGAAGAACTACACCGACCCAGTTACAGGGCTGGTATGGATTTCCGACGCCGGAATCATGAACGCCGGCAGGTCATCGCCGGTGGAAAACCCAAATGGAAACTCGATGCAGTATCAAACACGGCGGGATTTCCCAATCGACAATAAGAAGTACTGTTACAGTTTGAAAACAGAGGAGAGAAGAAGGTATTTGGTTCGAGCAAGTTTTCAGTATGGGAGTTTGAAGAATGAAGAAACGTACCCTAAATTTCAGCTGTATTTGGATGCAACTAAGTGGTCGACTGTTACCATTTTTGATGCTTCGAGAGTGTATGTGAAGGAGATGATCATTAGGGCACCCTCTGATTCCTTCGATGTGTGCATATGCTGTGCTACTACTGGCTCTCCATTCATATCCACTCTTGAGCTGCGCCCTTTTAACCTTTCAATGTATGCAACGGATTTTGAAGATCATTTCTTCTTGGAAGTTGCTGCTAGAGTGAATTTTGGTGCTCTGACCAAGGACGTGATAAGGTACCCAGATGATCCATATGACAGAATTTGGGATTCAGATCTTGAGAAGAGGCAAAATTATCTTGTGGGGGTGGCTCCGGGGACAGAAAGAATAAGAACTTCGAAGAACATTAATGTAATGACAAGGGAATATCCGCCTGTTAAGGTGATGCAAACTGCAGTTCTTGGCACAAAAGGAGTGCTTAGTTACAGGTTGAATTTGGATGATTTTCCTGCCAATGCCAGGGCGTATGCATATTTTGCTGAAATTGAAGATTTGGGTTGGAACGAGACTCGGAAGTTCAAATTAGAGGAACCTAACGTTCCAGACTCGAGCAATGCAGTGGTGAACATTGAAGAGAATGCCAATGGGACGTATACTCTTTACGAACCCAGTTATATGAACGTGACTCTGAGTTTTGTGCTTTCGTTTTCGTTTGTCAAGACTCGAGATTCAACTCGAGGACCGGTTTTGAATGCATTGGAAATTAGTAGATATGTTGAGATTGCTGCCAAGACTGATAGGCGAGATGAGTCAGTCGTGAATGCCTTCCATAACATGTCAGCAGAGAACGTTCGGACAAACGAAGGCGATCCTTGCATTCCAACAAGCTGGGAATGGGTGACTTGTACTGCCACGCAACCGCCGAGAATAACTAAAATTAAGCTCTCCGGGAAGAACGTCGAGGGTGGCATTCCACCAGAGATCAATACTATGGATGGATTAATGGAATTGTGGTTGGATGGAAATTCCCTTGTGGGGCCACTGCCTGACTTGAGTAATCTAATAAACTTGAAGATTTTACATCTAGAGAATAACAAATTGACAGGGACGTTACCGTCCTACCTGGGTAGTTTGCCCAACTTACAGGAACTTTATATTCAAAACAATACCTTTTCGGGTGCAATACCTCCAGAATTATTGGCAAAGAAACTCGTCTTTAAGTACGATGGTAACTTGGGGCTGCATAAAAGTCGACGATTCAATATGCAATCTAAGCTTATTATAGGAGTTTCCCTGGGAGCGTTTGTGCTCCTGATTATGCTACTTATAGGAAGTTTGCTGTTACTCCGCAAGCTTCAAAGAACGGCGCCTTACCAGAAAAAAGGTGGTTCGCTGCAAACCAGCACTAAGCGCTCTTCTGCCTACTCGATCGGCAAGGGCGATGAAGGCATGGCCTATTATTTATCTCTCTCTGAGCTCGAAGAAGCGACGAATAACTTCTCGAAGAAAATTGGTAAAGGCAGCTTTGGATCAGTCTATTATGGGAAGATGAGCGACGGCAAGGAAGTGGCAGTTAAAATCATGGCCGAGTCGTCTACACATGGGAATCGACAATTTGCGACCGAGGTTGCCCTCTTATCGAGAATTCATCACCGAAATTTGGTCCCTTTGATCGGCTACTGCGAAGAAGAACATCAACGGATTCTGGTTTATGAATATATGCATAATGGAACGTTACGAGATCACTTATACGGTTCTACGACTCAAAAGCACTTGAACTGGCTGGCTCGCCTGCACATTGCAGAAGATGCAGCTAAAGGGCTCGAGTATTTGCACACGGGATGCAGCCCAAGTATCATTCATCGAGATGTAAAAACTAGCAACATACTCCTCGACATCAATATGAGGGCAAAAGTTTCCGACTTTGGACTCTCGAGGCAAGCCGAGGAAGATTTGACTCATGTATCAAGCGTTGCTCGAGGAACCGTAGGCTACTTGGATCCTGAGTACTATGCTTCTCAACAACTTACCGAAAAGAGCGACGTCTATAGCTTCGGGGTGGTGCTGCTAGAACTGATCTCTGGGAAGAAACCTGTCTCACCAGAAGACTATGGCAGTGAATTGAACATTGTTCACTGGGCGAGGTCCTTGGTCCATAAAGGGGACGTGACGAGCGTCGTGGATCCATTTTTAGAAGGAAACGTGAAAATAGAATCAGTGTGGCGAATTGCTGAAGTAGCCATACAGTGTGTGCAGCAGCATGGAGCTTCCAGGCCAAGGATGCAGGAAGTCATCTTGGCCATACAAGATGCAATCAAGATTGAACATGGTAATGAAGGAAACCAGAAGCAATCTTCAGGCTGTTCAAGAGCACAATCATCTCGAAAAACTTTGCTGACGAGCTTTCTCGAGATCGAGAGCCCCGACAGTTCCATCCTTCCCTCTGCAAGGGTAGGGTTCATCTTTTGGCATAGCCCACTGGGAGGAGGAGCTTTACGCTTTGGTTTTCTGTTTGTTTTCAGTGGTTTCTTGTGGAAGAGGGAAGGGATCTTTCAGATTATGTATTATCAGCTGGAGAAATTCTCTCATCAGGATTCTTTGGAGGTTTTGGAGGCGGATATTCAGTATGCAAATTCTCTAGCGGCTGCAATCCCCATGGAAAAAGGGGGTGGCTATCTTCAAATGAAGTTGGTTTACAATCATTTGGCTCCTATTGCTCTGTTTTTGCTTCAATGGATGGACTGTTCTTGCACATGCTTGCTTCCAAGATATTTAAGCCTCTTCCACATACTTGTGTACAAGGTACATCCAGAGGGAAAACAAAAACGAAATATATCCAGGCATGGAAGGAAGGCAACTATTAGGGACTTCTACGCTATAATATTGCCTTCGCTTCAGCGAATCCACGGTAGTTTGGATAAGTTGGACGATTTCGAGGAAGAGCATCGTTGGATTGAGATGCCTAGCACGAAGAGAGGTGATAAAGACGGTAGACTCATGAACATCGATATGAAACGAGAAGACGAGTGTGGTATTTGTTTGGAGCCATGCACGAAGATGGTTTTGCCTAATTGCTGTCATGCAATGTGCATCAAATGCTATCGAAATTGGAACACGAGGTCAGAGTCGTGTCCATTTTGTCGTGGCAGCTTAAAGAGAGTCAACTCAGAGGACTTATGGGTGCTCACCTGTAGCGATGATGTGGTTGATGCCGAAACCGTTTCCAAGGAGGATATGTTGTGCTTTCGTCGATATATTAACAGCCTGCCTAAAGACTATCCAGATGCACTCTTCGCAGTATATTCCGAATATCTAATTTAG 3630 44.52 MGFLRFLALILLVVSSVHCQVKEFISIDCGATKNYTDPVTGLVWISDAGIMNAGRSSPVENPNGNSMQYQTRRDFPIDNKKYCYSLKTEERRRYLVRASFQYGSLKNEETYPKFQLYLDATKWSTVTIFDASRVYVKEMIIRAPSDSFDVCICCATTGSPFISTLELRPFNLSMYATDFEDHFFLEVAARVNFGALTKDVIRYPDDPYDRIWDSDLEKRQNYLVGVAPGTERIRTSKNINVMTREYPPVKVMQTAVLGTKGVLSYRLNLDDFPANARAYAYFAEIEDLGWNETRKFKLEEPNVPDSSNAVVNIEENANGTYTLYEPSYMNVTLSFVLSFSFVKTRDSTRGPVLNALEISRYVEIAAKTDRRDESVVNAFHNMSAENVRTNEGDPCIPTSWEWVTCTATQPPRITKIKLSGKNVEGGIPPEINTMDGLMELWLDGNSLVGPLPDLSNLINLKILHLENNKLTGTLPSYLGSLPNLQELYIQNNTFSGAIPPELLAKKLVFKYDGNLGLHKSRRFNMQSKLIIGVSLGAFVLLIMLLIGSLLLLRKLQRTAPYQKKGGSLQTSTKRSSAYSIGKGDEGMAYYLSLSELEEATNNFSKKIGKGSFGSVYYGKMSDGKEVAVKIMAESSTHGNRQFATEVALLSRIHHRNLVPLIGYCEEEHQRILVYEYMHNGTLRDHLYGSTTQKHLNWLARLHIAEDAAKGLEYLHTGCSPSIIHRDVKTSNILLDINMRAKVSDFGLSRQAEEDLTHVSSVARGTVGYLDPEYYASQQLTEKSDVYSFGVVLLELISGKKPVSPEDYGSELNIVHWARSLVHKGDVTSVVDPFLEGNVKIESVWRIAEVAIQCVQQHGASRPRMQEVILAIQDAIKIEHGNEGNQKQSSGCSRAQSSRKTLLTSFLEIESPDSSILPSARVGFIFWHSPLGGGALRFGFLFVFSGFLWKREGIFQIMYYQLEKFSHQDSLEVLEADIQYANSLAAAIPMEKGGGYLQMKLVYNHLAPIALFLLQWMDCSCTCLLPRYLSLFHILVYKVHPEGKQKRNISRHGRKATIRDFYAIILPSLQRIHGSLDKLDDFEEEHRWIEMPSTKRGDKDGRLMNIDMKREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTRSESCPFCRGSLKRVNSEDLWVLTCSDDVVDAETVSKEDMLCFRRYINSLPKDYPDALFAVYSEYLI 1209
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 9700720 9711690 - CmoCh04G019030.1 Cmo04g01903 380878
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g01903 1209 SUPERFAMILY Protein kinase-like (PK-like) 587 868 IPR011009 -
Cmo04g01903 1209 Pfam Leucine Rich repeats (2 copies) 459 495 IPR025875 -
Cmo04g01903 1209 ProSitePatterns Protein kinases ATP-binding region signature. 607 629 IPR017441 GO:0005524
Cmo04g01903 1209 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1089 1161 IPR013083 -
Cmo04g01903 1209 SMART serkin_6 601 875 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo04g01903 1209 SUPERFAMILY L domain-like 395 503 - -
Cmo04g01903 1209 Pfam Malectin-like domain 27 359 IPR024788 -
Cmo04g01903 1209 SMART ring_2 1113 1150 IPR001841 -
Cmo04g01903 1209 PANTHER - 14 898 - -
Cmo04g01903 1209 Pfam Ring finger domain 1111 1151 IPR001841 -
Cmo04g01903 1209 SUPERFAMILY RING/U-box 1104 1155 - -
Cmo04g01903 1209 Gene3D Transferase(Phosphotransferase) domain 1 677 897 - -
Cmo04g01903 1209 Gene3D Ribonuclease Inhibitor 371 522 IPR032675 -
Cmo04g01903 1209 ProSitePatterns Zinc finger RING-type signature. 1128 1137 IPR017907 -
Cmo04g01903 1209 CDD STKc_IRAK 607 868 - -
Cmo04g01903 1209 PANTHER OS07G0107800 PROTEIN-RELATED 14 898 - -
Cmo04g01903 1209 ProSiteProfiles Protein kinase domain profile. 601 875 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo04g01903 1209 Pfam Protein tyrosine and serine/threonine kinase 603 868 IPR001245 GO:0004672|GO:0006468
Cmo04g01903 1209 ProSiteProfiles Zinc finger RING-type profile. 1113 1151 IPR001841 -
Cmo04g01903 1209 Gene3D Phosphorylase Kinase; domain 1 575 676 - -
Cmo04g01903 1209 ProSitePatterns Serine/Threonine protein kinases active-site signature. 722 734 IPR008271 GO:0004672|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo04g01903 Cmo18g00711 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01903 Cmo-Chr4:9700720 Cmo14g00177 Cmo-Chr14:803287 0 dispersed
Cmo06g00344 Cmo-Chr6:1670287 Cmo04g01903 Cmo-Chr4:9700720 5.46E-24 dispersed
Cmo08g01131 Cmo-Chr8:7224396 Cmo04g01903 Cmo-Chr4:9700720 3.70E-47 dispersed
Cmo14g00063 Cmo-Chr14:309441 Cmo04g01903 Cmo-Chr4:9700720 5.61E-60 dispersed
Cmo16g00876 Cmo-Chr16:4703604 Cmo04g01903 Cmo-Chr4:9700720 2.56E-71 dispersed
Cmo04g01903 Cmo-Chr4:9700720 Cmo04g01906 Cmo-Chr4:9716025 1.39E-40 proximal
Cmo04g01903 Cmo-Chr4:9700720 Cmo04g01904 Cmo-Chr4:9714250 6.81E-18 tandem
Cmo02g00934 Cmo-Chr2:5720343 Cmo04g01903 Cmo-Chr4:9700720 9.43E-06 transposed
Cmo08g00038 Cmo-Chr8:191423 Cmo04g01903 Cmo-Chr4:9700720 4.95E-126 transposed
Cmo08g00214 Cmo-Chr8:1277155 Cmo04g01903 Cmo-Chr4:9700720 1.21E-126 transposed
Cmo18g00711 Cmo-Chr18:8942293 Cmo04g01903 Cmo-Chr4:9700720 0 wgd
Cmo04g01903 Cmo-Chr4:9700720 Cmo05g00069 Cmo-Chr5:252742 2.39E-115 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74287 PF12819 Malectin_like 6.70E-87 CL0202 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g01903 - - csv:101207149 1666.74