Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g01910 ATGGATATTCCTTCTATTATCGTAAATGCTGTGTTTATTTTTGCATTATCGATGTGGATTTTGCTTCACTCGTGTAGACGAGAAGCAGAGAGTGGAATCCCTCAATCGAGAAACAGAGCATTTCGAGAGTTTAAATGGCTAACCAGCATTACGATCTTTTCTAATGCTGTTCTTCCGTTTTGGTATTCTGGATTTGCTGCTTATGAGTACTGGAATCATGGAATCGTTGATTGGGGATTGATCATCTCAGCTTTAACGTGGATTTTCGCCGCTGCGATTGCTTTCTACTGGAGAAATGGAACGAATCATCAAGCCAAAAGATGGCCGTTGATTCTAATTGTTTGGTGGATTTTCTCTTGTTTGTATGGATTAGGTTCTTCGATTATTTACCTGCTTACACACTTGAAATCCATGGAGTTTCCTCATTTTCTTCCAAAAGCTACTGTTATAGATTTTGCTTCATTCACTCTGTCTTTGATCATCTGCTGGACTGCACTGATTGTTAACTATCATGATAAACACAATGATCTTGAGAAATCATTGCTCCAAAAAGAGAATGATTCTTGTTCTGAATATGATGGTGGGTTCATCAGTCCTGGATTTTGGAGTCAAATTACATTCCAATGGCTAAACCCTCTCTTCAAAAGGGGGAGGAATCAAAAACTTGAATTAGTTCATGTTCCTTGTGTTCCTCAATCTGAAACAGCTGAATATGTTTCCTCCTTGCTGGAAGAATCGCTTCAGAGAAAGAAAATTGAATCATCTTCCTTGCCCAAAGCTATAGTTCTTGCTACATGGAAATCTCTGGTTTTAACTGCAATATTTGCGGGAGTCAACACATTAGCATCCTTTATGGGGCCTTTCTTAATCTCCAACTTTGTGAATTATCTGTTGGGAAAAGGCGATAAATCAAGCAACCGTGATGGGTTGATTCTTGCATTCTTCTTCTTCTTTGCTAAGACATTGGAGTCTCTTACTCAAAGACAGTGGTATTTCGGCACTCACCGTGTCGGTATCCAGGTAAGGGCAGCTCTTACAGTGATGATCTACAAGAAATCTATATCTGTTAATGCTGCTGGTCCAAGTAATGGAAAGATCATTAATCTAATAAATGTTGATGTTGAAAGAATTGGAGACTTCTCTTGGTATATCCATAAGATTTGGTTGCTTCCTGTCCAAATAGCTCTAGCACTTATCATTCTTTTTAGGAATCTTGGAGCTGCTCCTTCCATTACTGCTCTGTTAGCTACAATATTTATAATGGTAAGCAACACACCTTTAGCTAATGTACAAGAAAGTCTACACTCGAAAATAATGGATGCAAGAGACTCTAGAATCAAATTGACATCAGAGACTCTAAAGAACATGAGAGTCTTGAAACTTCATTCTTGGGAACAGACGTTTATGAAGAAAGTCTTGCAACTTCGAGAAGTCGAAAGGAGCTGGTTAAAGAGATATCTCTATACATGCTCCGTTATAGCATTTCTGTTCTGGGTTTCACCAACTTTAGTTTCAGTACTTACTTTTGGTGCTTGTGTTATGGTGAAAATCCCTCTAACAGCAGGCACGGTTTTATCAGCCATTGCTACTTTTAGGATCCTACAAGATCCAATTTATAACCTACCGGAGCTGATTTCCATGATTGCTCAAACAAAAGTCTCCCTTGACCGTATACAAGAGTTCATTCAAGAAGAAGATCAAAGGAAGCAGATTTATCATCCTCCTTCCAGTTCATCAGATATCGTGATCGAAATGGAGGTAGGGGAGTATTTGTGGGAAGCGAGCGATCTAAATTTTAAGAAACCAACGATTAAAGTTTCAGAAAAGATGCAAATACCAAAAGGTTACAAAGTTGCAGTTTGCGGGTCGGTCGGTTCGGGAAAATCAAGCCTACTTTGTAGTATACTGGGCGAGATCCCACAGATTTCAGGAACACAAATGAAGATACATGGAACTAAAGCTTATGTTCCCCAAAGTGCTTGGATCCAATCAGGCACTGTAAGAGAGAATGTGCTGTTTGGGAAGGAGATTGATAAACATTTTTATGAGGATGTGCTAGAAGCCTGCGCTCTGAATCAGGATATCAAGCTGTGGCTGGATGGCGATTGCACCTTGTTGGGAGAGAGGGGTGTGAATCTAAGTGGTGGACAAAAGCAGCGGATTCAATTGGCAAGGGCAGTGTATAGTGATGCAGATGTTTACTTCCTGGATGACCCTTTTAGTGCTGTGGACGCATGTACTGGAACACATTTGTTCAAGAGATGTCTTTTGCAACTTCTGTCTAGTAAAACTGTTGTATATGCTACTCATCACTTGGAATTCATAGAAGCTGCGGACCTTGTTCTGGTAATGAAAAATGGTCATATTGTTCAATCAGGAAAGTATGCAGAATTAATATCAGATTCGAACGGTGAACTTGCTAGACACATTGCAGCACATAGAAGATCACTGAATGGAGTTAAGCCACTGAAAGAAGATAAACCCCATCATAAAAGACCATGTAAGACACATCAAATAGAAGCTCTAGATGAAAGTTCTTCCTTGTCCCTTGGAAATGGTGGCCATTCTGTGAGAGCTCAAGAAGAGGAAGCGCAAACCGGTCGAGTACAGTGGAGTGTCTACTCAACCTTCATCACATCTGCTTATAAAGGAGCTCTTGTTCCTGTAATCCTTCTGTGTCAAGTTTTGTTTCAAATCCTTCAAATGGGCAGTAATTACTGGATTTCTTGGGCAACAGAAGAAGAAGGCAAGGTCAGCAGAAAGCAGTTTTTCGTGACGTTCGTTTTGATGTCCGGTGGGAGCTCCATCTTTATATTAGGCCGTGCCGTTTTTATGGCAACCATCGCTATCGAGACGGCACAACGAATGTTTCTTGGAATGGTGACATCAATATTTGCAGCACCTATTTCATTTTTTGATGCCAAACCTTCAAGCCAAATCCTTAACAGGTCATCTACTGATCAAAGCACCTTGGATACAGATATCCCTTATAGATTAGGAGGATTGGCTTTTGCACTCATTCAGCTGTTGAGTATCATCATTCTGATGTCCAAGGTTGCATGGCAAGTTTTCCCACTCTTCCTTGTCGTCCTTGCTCTCTCTATATGGTACCAGGGATATTACATCAGTACTGCTAGAGAACTAGCTAGAATGGTCGGGATTCGAAAGGCTCCGATTCTTCATCACTTTTCGGAAACAGTCGTTGGTGCAACAATTATCCGTTGTTTTAATCAAGAGGATCGTTTCTTGAGAAAAACACTGAAGCTGGTTGATGATTATTCTCGTGTGGTCTTTCACAACTCGACTTCTATGGAATGGTTGTGCCTACGGATCAATTTTCTTTTCGACGTCGTCTTCTTTCTTGCGCTCGTCATCTTAGTGACCCTTCCTAGAACAGCTATTGATCCTAGCTTAGCAGGATTAGCAGCCACATATGGTTTGAACATGAATGTGCTTCAGGCTTGGGTGATATGGAATTTATGCAACGTTGAGAACAAAATGATATCTGTTGAAAGAATTCTTCAGTTTACGAACATCGCTTCGGAAGCACCACCGGTTATCGAAGATTGTAGGCCGCTGCCGGAATGGCCAACGGAGGGAAAGATAGAACTTGAGAACCTCCATGTCCAATACCGTCCTAATCTTCCATTGGTTCTCAAAGGGATCACTTGTACCTTCCCAAAAAGGAAGAAGATTGGAGTTGTTGGCAGGACAGGAAGTGGTAAGTCCACCTTAATTCAAGCACTTTTTAGAGTGGTTGAGCCTTCTGCTGGAAGGATTCTCATTGATGGAGTTGATATTTGCAAAATGGGTCTGCATGATCTGAGGTCTAAGTTGGGTATCATTCCACAAGACCCAACATTGTTCCAAGGAACCATGAGAACTAATCTAGACCCTTTGCAACAACATAGTGACCAAGAAATATGGGAGGTCCTTCACAAGTGTCGGTTCGCCGAGATCATCCAAACAGACCGAACAGTTCTTGAAGCGCCAGTTGCTGAAGATGGAGAGAATTGGAGTGTTGGACAGAGGCAACTTGTTTGCTTGGCTAGGGTGCTTCTCAAGAAGCGTAGGATTCTTGTGTTGGATGAGGCAACAGCCTCCATTGATACTGCAACAGAAAACAGAATTCAGGAAACGATAAGAGAGGAGACGAATGGATGCACGGTCATTACCGTGGCTCATCGAATCCCGACAGTCATCGACAATGATTTGGTTTTGGTTCTTGATGAAGGCAAGCTAACTCCTTACATTTGA 4257 41.37 MDIPSIIVNAVFIFALSMWILLHSCRREAESGIPQSRNRAFREFKWLTSITIFSNAVLPFWYSGFAAYEYWNHGIVDWGLIISALTWIFAAAIAFYWRNGTNHQAKRWPLILIVWWIFSCLYGLGSSIIYLLTHLKSMEFPHFLPKATVIDFASFTLSLIICWTALIVNYHDKHNDLEKSLLQKENDSCSEYDGGFISPGFWSQITFQWLNPLFKRGRNQKLELVHVPCVPQSETAEYVSSLLEESLQRKKIESSSLPKAIVLATWKSLVLTAIFAGVNTLASFMGPFLISNFVNYLLGKGDKSSNRDGLILAFFFFFAKTLESLTQRQWYFGTHRVGIQVRAALTVMIYKKSISVNAAGPSNGKIINLINVDVERIGDFSWYIHKIWLLPVQIALALIILFRNLGAAPSITALLATIFIMVSNTPLANVQESLHSKIMDARDSRIKLTSETLKNMRVLKLHSWEQTFMKKVLQLREVERSWLKRYLYTCSVIAFLFWVSPTLVSVLTFGACVMVKIPLTAGTVLSAIATFRILQDPIYNLPELISMIAQTKVSLDRIQEFIQEEDQRKQIYHPPSSSSDIVIEMEVGEYLWEASDLNFKKPTIKVSEKMQIPKGYKVAVCGSVGSGKSSLLCSILGEIPQISGTQMKIHGTKAYVPQSAWIQSGTVRENVLFGKEIDKHFYEDVLEACALNQDIKLWLDGDCTLLGERGVNLSGGQKQRIQLARAVYSDADVYFLDDPFSAVDACTGTHLFKRCLLQLLSSKTVVYATHHLEFIEAADLVLVMKNGHIVQSGKYAELISDSNGELARHIAAHRRSLNGVKPLKEDKPHHKRPCKTHQIEALDESSSLSLGNGGHSVRAQEEEAQTGRVQWSVYSTFITSAYKGALVPVILLCQVLFQILQMGSNYWISWATEEEGKVSRKQFFVTFVLMSGGSSIFILGRAVFMATIAIETAQRMFLGMVTSIFAAPISFFDAKPSSQILNRSSTDQSTLDTDIPYRLGGLAFALIQLLSIIILMSKVAWQVFPLFLVVLALSIWYQGYYISTARELARMVGIRKAPILHHFSETVVGATIIRCFNQEDRFLRKTLKLVDDYSRVVFHNSTSMEWLCLRINFLFDVVFFLALVILVTLPRTAIDPSLAGLAATYGLNMNVLQAWVIWNLCNVENKMISVERILQFTNIASEAPPVIEDCRPLPEWPTEGKIELENLHVQYRPNLPLVLKGITCTFPKRKKIGVVGRTGSGKSTLIQALFRVVEPSAGRILIDGVDICKMGLHDLRSKLGIIPQDPTLFQGTMRTNLDPLQQHSDQEIWEVLHKCRFAEIIQTDRTVLEAPVAEDGENWSVGQRQLVCLARVLLKKRRILVLDEATASIDTATENRIQETIREETNGCTVITVAHRIPTVIDNDLVLVLDEGKLTPYI 1418
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 9742902 9748788 + CmoCh04G019100.1 Cmo04g01910 380885

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g01910 1418 Pfam ABC transporter transmembrane region 271 537 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cmo04g01910 1418 Pfam ABC transporter transmembrane region 892 1129 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cmo04g01910 1418 Pfam ABC transporter 610 740 IPR003439 GO:0005524
Cmo04g01910 1418 SUPERFAMILY ABC transporter transmembrane region 265 566 IPR036640 GO:0005524|GO:0016021
Cmo04g01910 1418 SMART AAA_5 1228 1415 IPR003593 -
Cmo04g01910 1418 SMART AAA_5 614 788 IPR003593 -
Cmo04g01910 1418 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 270 550 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cmo04g01910 1418 CDD ABC_6TM_ABCC_D2 887 1177 IPR044726 GO:0140359
Cmo04g01910 1418 CDD ABCC_MRP_domain2 1200 1414 - -
Cmo04g01910 1418 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1193 1415 IPR027417 -
Cmo04g01910 1418 ProSitePatterns ABC transporters family signature. 713 727 IPR017871 GO:0005524
Cmo04g01910 1418 Gene3D - 1186 1417 IPR027417 -
Cmo04g01910 1418 CDD ABC_6TM_ABCC_D1 271 558 IPR044746 GO:0140359
Cmo04g01910 1418 Gene3D ABC transporter type 1, transmembrane domain 255 568 IPR036640 GO:0005524|GO:0016021
Cmo04g01910 1418 Gene3D ABC transporter type 1, transmembrane domain 854 1183 IPR036640 GO:0005524|GO:0016021
Cmo04g01910 1418 SUPERFAMILY ABC transporter transmembrane region 888 1184 IPR036640 GO:0005524|GO:0016021
Cmo04g01910 1418 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 609 802 IPR027417 -
Cmo04g01910 1418 Pfam ABC transporter 1219 1367 IPR003439 GO:0005524
Cmo04g01910 1418 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1202 1418 IPR003439 GO:0005524
Cmo04g01910 1418 Gene3D - 582 826 IPR027417 -
Cmo04g01910 1418 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 109 1412 - -
Cmo04g01910 1418 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 582 811 IPR003439 GO:0005524
Cmo04g01910 1418 CDD ABCC_MRP_domain1 583 787 - -
Cmo04g01910 1418 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 889 1165 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cmo04g01910 1418 PANTHER OS01G0902100 PROTEIN 109 1412 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g01910 - - - csv:101219301 2519.96
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo04g01910 Cmo18g00707 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01910 Cmo-Chr4:9742902 Cmo09g00991 Cmo-Chr9:5263363 1.29E-14 dispersed
Cmo18g00707 Cmo-Chr18:8908612 Cmo04g01910 Cmo-Chr4:9742902 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1141 . . . . . . . . Cmo04g01910 Cmo18g00707 . Cma18g00720 . Car18g00666 . Cpe09g00569 Cpe01g01598 Bhi07g01868 . . Lac13g0089 Hepe10g1543 . . Cla05g02633 . Cec05g2863 Cco05g2895 Clacu05g2831 Cmu05g2678 . . . . . Lsi04g00654 . . Cme10g00632 Blo06g00821 Blo11g00984 . . . . . . . . . Cma04g01814 . Car04g01826 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006115 0 1 2 1 1 1 2 1 1 1 1 1 1 1 1 1 1 3 2 1 1 2 1 1 1 1 1 2 3 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo04g01910 Cmo_Chr04 FPKM 0.0 0.0 0.0 1.007377 0.0 0.0 0.0 0.0 0.0 0.506268