Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g01912 ATGGAGTTTCAAATGCCCGAGAGCCCATCATCATTGGCCTTGTTGTTCTTCTTCTTCTTCATGTTTCTATTTGTATATGTATTTGCTTACTTGGTTGTGCTCCAGAATTGGGGGCCCAAGCACAGGCTAGAGGCCTCGAGCTGCTTCATATCACTCGCCCATGGCTGTCCCGTCGTCATCATGGCCATCATTGCAATTCTCCAAGCTCCAAACATGGCTGATTTCGCCGCTCTCAATACCAAATACCAGGGCCTTGTCCTCGAGTACAGCATGGCTTATTTCTTGATGGATCTTCTTCACTTCATACTGTTTTATCCACGAGATTTCGTCTTTATATGTCATCATCTGGCAGTGCTTTACGTGTTCGCTACATGCCATTACTTGGTTAGTCGTGGTGCTCTGCCCATTCTGGTGCTTTTGGTGCTTGCGGAGTTCAGCAGTGGGTGCCAGAATGTTTGGACCCTAGCGGGTTACAGAAGGGCTGATGTGCCGGCCGCCGCTAAGTTTCAGGACTTCGTGTCTCCATATTTCTTCACCTTTTACAGCATTCTCAGAGGGGGCTTCGCGCCTGTCTTTCTGCATAAGATGGGAGAATTTTATGTCAGCAGTGCAGCAGAAAATTTGATTCCTAAGTGGGCTTGGATTTCATGGATGGGTGTTATTGGAACTGCCATTTTTGTTAGCATACTGTGGGTCGGAAATCATTGGGTTCTCTGGTTTCGACGTACAAAGCATGGGAAAGCAGTGTGA 750 47.33 MEFQMPESPSSLALLFFFFFMFLFVYVFAYLVVLQNWGPKHRLEASSCFISLAHGCPVVIMAIIAILQAPNMADFAALNTKYQGLVLEYSMAYFLMDLLHFILFYPRDFVFICHHLAVLYVFATCHYLVSRGALPILVLLVLAEFSSGCQNVWTLAGYRRADVPAAAKFQDFVSPYFFTFYSILRGGFAPVFLHKMGEFYVSSAAENLIPKWAWISWMGVIGTAIFVSILWVGNHWVLWFRRTKHGKAV 249
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 9758309 9759058 - CmoCh04G019120.1 Cmo04g01912 380887

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g01912 249 SMART lag1_27 40 244 IPR006634 GO:0016021
Cmo04g01912 249 ProSiteProfiles TLC domain profile. 40 244 IPR006634 GO:0016021
Cmo04g01912 249 PANTHER GLABROUS1 ENHANCER-BINDING PROTEIN-LIKE 2 9 245 IPR040327 -
Cmo04g01912 249 PANTHER TRAM, LAG1 AND CLN8 (TLC) LIPID-SENSING DOMAIN CONTAINING PROTEIN 9 245 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g01912 - - - csv:101219781 338.961
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01912 Cmo-Chr4:9758309 Cmo11g01636 Cmo-Chr11:11634705 6.11E-83 transposed
Cmo04g01912 Cmo-Chr4:9758309 Cmo14g00718 Cmo-Chr14:3689505 5.95E-83 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1165 . . . . . . Bma14g01881 . Cmo04g01912 . . . . . . . Cpe01g01601 . . . . . . . . . . . . . . . . . . Lsi04g00657 . . Cme10g00636 . Blo11g00981 . . . . . . . . . Cma04g01817 . Car04g01829 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013585 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 0 26
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo04g01912 Cmo_Chr04 FPKM 9.512637 10.314496 10.411823 10.541371 15.389373 13.932754 16.65012 4.840611 5.257633 5.800254