Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g01919 ATGTCGTTTTCAAGGAACATGCCATCGACAACCTCAGTTTTCTCAGCTTACACATCCTTCGCAGCTTCAACAATGGTAGCTCGAACAATGATGTCGGAATCCCACACAATCATCTCCCAAATCATTCCCCAAAAACTCCGCGACCAAATCGCCTCCAAATTCAACGCCCTCTTCGGCTCCATCTCCTCCCAAATGGTTCTCGTCATCGAAGAGAACATTGGAATCGCCATTAACGAGCTTTACAGAGCTTCTGAAACCTACCTTTCCACAAAAATCCCCCCATCCATGAAGCACCTCAAGGCCTCCAAAGCTCCAGGCGACAACAACTTTACCTTCAAAATCAACAAAGGCGACGTCCTAATCGACGTCTTCGAAGGAATCGAAATCGCCTGGGAACTCATTTCCACTGAAAAACAGAGCACCAATTTCGACTTCGATACCTATACTCAAACATCCGAAACAATCGAAAAACGCCATTACCAAATCAGCTTCCACAAGAACCAAAGTTGTTTGGGTATGGATGCGAAGGAGAAGAGGGAGTTAATGGAGGATTTGGACAGGTTTGTGAGGAGAAGGGAGTTTTACAAGAGGATTGGGAAGGCGTGGAAAAGAGGGTATCTTCTATATGGGCCACCGGGAACTGGGAAGTCGAGCTTGGTGGCGGCCATGGCGGAGTATCTGAAGTTCAATATTTATGATCTGGAGCTGACCAGTGTTCAGACCAACTCCGCGCTTAGGACCATGTTGTTATCCACTACTCATAGCTCCATCATTGTTATTGAAGATATTGATTGCAGCGCTGAGCTTCAGGATCGGAAAAATGGTGGATCTGACGGCGGTAACACCCAGTTGAGTTTATCTGGAGTACTAAACGCCATAGATGGGCTGTGGTCAAGCTGTGGGGACGCGAGAATAATAGTCTTCACAACAAACCACAAGGAGAAATTGGACCCGGCATTGTTGAGAGCAGGGCGCATGGACAAGCACGTGCACATGACTTACTTGACTCCTTCTGGCTTCCACACTCTGGCCTCAAACTATCTGCACATCACTCACCATCACCGTTTCAAACACATCCAAGACCTTATAACCGAGGTGGAGGTCACGCCGGCGGAAATTGCAGAACACCTCATGAAAACTGACGACGCTGACGTGGCACTTGAATCTGTCGTTGAATTCGTCAACGACAAGAAGAGGAAGAAGATGGGCAAAGAGTGTGGTTCTGAAGTGATTGAAAAGACAGGACAGATTCCCCAACAGGAACCCAGTGAGAAACAGAGACGCAAAAGAAGGCGAAAGAGACAGGGTCGATGA 1314 47.56 MSFSRNMPSTTSVFSAYTSFAASTMVARTMMSESHTIISQIIPQKLRDQIASKFNALFGSISSQMVLVIEENIGIAINELYRASETYLSTKIPPSMKHLKASKAPGDNNFTFKINKGDVLIDVFEGIEIAWELISTEKQSTNFDFDTYTQTSETIEKRHYQISFHKNQSCLGMDAKEKRELMEDLDRFVRRREFYKRIGKAWKRGYLLYGPPGTGKSSLVAAMAEYLKFNIYDLELTSVQTNSALRTMLLSTTHSSIIVIEDIDCSAELQDRKNGGSDGGNTQLSLSGVLNAIDGLWSSCGDARIIVFTTNHKEKLDPALLRAGRMDKHVHMTYLTPSGFHTLASNYLHITHHHRFKHIQDLITEVEVTPAEIAEHLMKTDDADVALESVVEFVNDKKRKKMGKECGSEVIEKTGQIPQQEPSEKQRRKRRRKRQGR 437
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 9791425 9794768 + CmoCh04G019190.1 Cmo04g01919 380894

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g01919 437 Pfam Domain associated at C-terminal with AAA 42 134 IPR025753 -
Cmo04g01919 437 PANTHER - 6 168 - -
Cmo04g01919 437 SMART AAA_5 202 336 IPR003593 -
Cmo04g01919 437 ProSitePatterns AAA-protein family signature. 304 322 IPR003960 GO:0005524|GO:0016887
Cmo04g01919 437 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 119 383 IPR027417 -
Cmo04g01919 437 PANTHER - 171 417 - -
Cmo04g01919 437 Pfam ATPase family associated with various cellular activities (AAA) 207 332 IPR003959 GO:0005524|GO:0016887
Cmo04g01919 437 PANTHER BCS1 AAA-TYPE ATPASE 6 168 - -
Cmo04g01919 437 CDD AAA 203 334 - -
Cmo04g01919 437 Gene3D - 157 330 IPR027417 -
Cmo04g01919 437 MobiDBLite consensus disorder prediction 402 437 - -
Cmo04g01919 437 Gene3D - 331 401 - -
Cmo04g01919 437 PANTHER BCS1 AAA-TYPE ATPASE 171 417 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g01919 - - K08900 mnt:21388924 471.855
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01919 Cmo-Chr4:9791425 Cmo07g00466 Cmo-Chr7:2134773 3.20E-129 dispersed
Cmo04g01919 Cmo-Chr4:9791425 Cmo07g00464 Cmo-Chr7:2122300 9.53E-114 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1178 . . . . . . . . Cmo04g01919 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000531 0 2 1 2 1 4 1 7 5 4 3 5 2 3 7 3 5 0 1 5 5 2 3 6 7 7 5 5 5 5 111
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo04g01919 Cmo_Chr04 FPKM 0.0 0.0 14.673213 15.167524 9.864586 9.358969 11.002481 0.0 0.0 0.0