Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g01920 ATGGATGTTCCGGAGGTTGAAGAAATATTTTTTGCTGCCGGTGATGCCAAGTTGCATGGAGAAATGTACAAGAAGCTCGCTGCAATTTATGGTCAAGTTATGTCAATTTTCCCTTCCTTGGAAGCAGCACGACCTAGGAGCAAAACTGGTATTCAGGCTTTATGTTCGTTACATGTTGCTCTTGAGAAGGCCAAGAATACTCTTCGGCATTGCTCGGAGTCCAATTTCATCACGAGTAGCCAACCAATGTATACAACCATTATGCTCTACTTCCTTTTTCTTCTTCTGAAAGTCACTAATGCTAGTGGGTTTGCATTTGCTATAACTGGAGATGCTGTTCTAGCCAAATTTGAGAAGGCAAGATGTTCTCTTGAAGCTAGTCTTATCTGCGTTGAAGATATTGTCTCACAATCAATTGGATTTCAGAGTTTTGGAAGCAGCATAGTGAAAGTTCATGATTTTGATTTTAAAAGGAAATTATTCATTCTTCACTTATTCGATTACGTAATGAACTCAATGACGTCTAGAATCTTGCACACTTCGATCTCTTGCATTTGGAATATTCAGCCAATAGTGAACGAACTCAAGAACACTGTTTTCTTACTCGATCCACTCGAGAAACAGGTTGGTGATGATATCATTGCACTACTCTTGCAAGAAAGAAAATTTGATGATTCCAATGGCCACAATGAGCTAGAGCATTTTCATATGGCTGCCACGAAACTTGGAATTACCTCATCCAAAGCAGCCCTCACAGAGAGGAGAGCTCTTAAGAGACTTGTAGAACGAGCTCGCTTAGAAGAAGACAAGCGAAAGGAATCAATTGTAGCTTATCTTTTGCATCTGATGAGGAAGTATTCTAAGTTATTTAGAAGTGAGGTATTGGATGACACCGACTCACAGGGTGGATCAACTCCTTGTTCTCCTACTGTTCGCTGTTCTCTTGAGGACAATGGACTTACAGCAAACGGTCAAGCCTTTGAACAGCAGCTTTCAAAGCTTAGTTCCTTTAATTTCAAGCCAAATTATAGGACATCAGGGAAGATGCCTCTTCCACCCGAGGAGTTGAGGTGTCCAATATCATTGCAGCTAATGTACGACCCTGTAATAATTGATTCTGGGCAAACATATGAAAGGATCTGCATAGAAAAGTGGTTCAGTGATGGTCATAAAACCTGCCCAAAGACCCAACAGAAGCTCTCCCACCTGTCTATGACGCCTAATTATTCTGTGAAGGGTCTCATTGCTAATTGGTGTGAACATAACTGTGTTCCGATCCCTGATGGTCCACCAACGTCACTTGATCTGAATTATTGGAGGCTTGCATTGTCTGATTCTGAGTCTGGAACATCAAGATCTGTGGACAATGTTGGTGGCTCTCACACGTTGAAGGAAGTTAAGGTAGTTCCTTTGGAAGAAAGTGGATCAATTAAAGTTGATGAAGAAAATGAAGCAGATGATAATACATGCACGGAGGAGTCGTCTAATTTCATTACACTGGAGAGTTGTGTAAATTTTATGACAGTAGTGACTGAAGAGGGAGACTTGAGAACAAAATGTAGGGTTGTGGAGCAGATAAGACTTGCACTGAAGGATGATGATGAAGCTCGAATGTTGATGGGAGCCAATGGCTTTGCTGAAGCACTTATGGAATTCCTAACTTTAGCTCTTATTGAAGAAAACGCTGATGCTCAGGAAAGTGGAGCCATGGCTCTCTTCAATCTTTCTGTCAACAACAACAGAAACAGGGAAATGATGATTGCAGCGGGTGTAATCTCGTTATTAGAGAACATGATTTTGAAAGCCAATTTACATGGACCTGCAACAGCTCTGTATTTGAATCTTTCCTGCCTAGAAGATGCCAAACCTATCATTAGTTCAAGTAGAGCCGTTCCTTTCCTGATCCAGCTGCTTACTCGTAACGGCGAATCCCAAACCAAGCTCGATGCACTTCATACCCTCTATAACCTTTCAACCACGCCCTCCATCATTCCTGTTCTTCTCTCCGCTGGTATTATCGCTGGACTTCAATCCTTCATCGCAGCTCCGAGCGACAGCACGTGGACAGAGACTTCTTTAGCTATCCTAATAAACATAGCTTCAAGCCAGTTGGGCATAGAACAAATAACTTCGGCTCCAGAGCTTATCAGTGGGTTGGCAGCAATCGTGGACGCCGGCGAACGTGCCGAGCAGGAGCAAGCTGTCTCGTGTTTGTTGACTTTGTGTAGAGGGAGTGAAAGATGCAGTCAAATGGTGTTACAAGAAGGAGTGATTCCAGGATTGGTGGCAGTAACAGTAAATGGGAGTTCAAGAGGGAAAATAAAAGCTCAAAAACTTCTGATGTTGTTTAGGGAGCAGAGGCAAAAAGACACAGCCGATACCATTCAGCAGCGAGATGGAAATAGCGACGTAGCAGCCATGGCTGCTCCAGACTATAAGCCATTATGCAAATCAGTGTCGAAGAAAAAGATGGGGAAAGCTTTAAGCTTTTTTGCGAAGAGCAAACGATTTTCACTCTACCAATGTTGA 2529 42.59 MDVPEVEEIFFAAGDAKLHGEMYKKLAAIYGQVMSIFPSLEAARPRSKTGIQALCSLHVALEKAKNTLRHCSESNFITSSQPMYTTIMLYFLFLLLKVTNASGFAFAITGDAVLAKFEKARCSLEASLICVEDIVSQSIGFQSFGSSIVKVHDFDFKRKLFILHLFDYVMNSMTSRILHTSISCIWNIQPIVNELKNTVFLLDPLEKQVGDDIIALLLQERKFDDSNGHNELEHFHMAATKLGITSSKAALTERRALKRLVERARLEEDKRKESIVAYLLHLMRKYSKLFRSEVLDDTDSQGGSTPCSPTVRCSLEDNGLTANGQAFEQQLSKLSSFNFKPNYRTSGKMPLPPEELRCPISLQLMYDPVIIDSGQTYERICIEKWFSDGHKTCPKTQQKLSHLSMTPNYSVKGLIANWCEHNCVPIPDGPPTSLDLNYWRLALSDSESGTSRSVDNVGGSHTLKEVKVVPLEESGSIKVDEENEADDNTCTEESSNFITLESCVNFMTVVTEEGDLRTKCRVVEQIRLALKDDDEARMLMGANGFAEALMEFLTLALIEENADAQESGAMALFNLSVNNNRNREMMIAAGVISLLENMILKANLHGPATALYLNLSCLEDAKPIISSSRAVPFLIQLLTRNGESQTKLDALHTLYNLSTTPSIIPVLLSAGIIAGLQSFIAAPSDSTWTETSLAILINIASSQLGIEQITSAPELISGLAAIVDAGERAEQEQAVSCLLTLCRGSERCSQMVLQEGVIPGLVAVTVNGSSRGKIKAQKLLMLFREQRQKDTADTIQQRDGNSDVAAMAAPDYKPLCKSVSKKKMGKALSFFAKSKRFSLYQC 842
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 9795617 9800853 - CmoCh04G019200.1 Cmo04g01920 380895
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g01920 842 ProSiteProfiles U-box domain profile. 351 425 IPR003613 GO:0004842|GO:0016567
Cmo04g01920 842 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 7 1 150 - -
Cmo04g01920 842 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 7 176 799 - -
Cmo04g01920 842 SUPERFAMILY ARM repeat 503 775 IPR016024 -
Cmo04g01920 842 SUPERFAMILY RING/U-box 351 426 - -
Cmo04g01920 842 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 352 424 IPR013083 -
Cmo04g01920 842 SMART Ubox_2 355 418 IPR003613 GO:0004842|GO:0016567
Cmo04g01920 842 Pfam U-box domain 353 422 IPR003613 GO:0004842|GO:0016567
Cmo04g01920 842 Gene3D - 645 796 IPR011989 -
Cmo04g01920 842 CDD RING-Ubox_PUB 356 398 IPR045210 -
Cmo04g01920 842 SMART arm_5 533 577 IPR000225 GO:0005515
Cmo04g01920 842 SMART arm_5 579 617 IPR000225 GO:0005515
Cmo04g01920 842 SMART arm_5 618 659 IPR000225 GO:0005515
Cmo04g01920 842 Gene3D - 499 644 IPR011989 -
Cmo04g01920 842 PANTHER U BOX DOMAIN-CONTAINING 1 150 - -
Cmo04g01920 842 PANTHER U BOX DOMAIN-CONTAINING 176 799 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo04g01920 Cmo18g00698 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01920 Cmo-Chr4:9795617 Cmo16g00674 Cmo-Chr16:3336796 1.66E-58 dispersed
Cmo12g00050 Cmo-Chr12:263478 Cmo04g01920 Cmo-Chr4:9795617 0 wgd
Cmo18g00698 Cmo-Chr18:8845107 Cmo04g01920 Cmo-Chr4:9795617 0 wgd
Cmo04g01920 Cmo-Chr4:9795617 Cmo05g00089 Cmo-Chr5:359746 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g01920 - - csv:101210079 1311.98