Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g01922 ATGATGGAGAAGAATCTGCTGTTTCTTGTCCTCGATTTGGTTTTGTTTTTTCACTTTCAGGTCTCTTTTAGGGCATTTTCCCTCTCGCCGGACGGTCTCTCGCTTCTCTCTCTCAAGTCGGCGGTCGACCAGTCGCCTGATTCCTCTGTTTTCTCCGATTGGAACGAGGATGACTCGACGCCTTGCCGATGGTCTGGCATTTCTTGTATGAATGTTTCTGGCGACTCGCGTGTCGTTGGGATTGCTCTCTCTGGTAAGAATCTCCATGGCTATATTCCTTCTGAGCTTGGGTCGCTTGTCTATCTCCGGCGATTGAACCTCCATAACAATAATTTCTACGGCTCCATACCTGAGCAGTTGTTTAATGCTACCTCATTGCATAGCTTATTTCTCTATAGCAATAATCTATCTGGTTCTTTTCCCCCTTCGATCTGCAACATCCCGAGGCTTCAGAACCTCGATCTCTCCAATAATTCTCTCGCCGGACCAATTCCCGACGAATTGAAGAATTGTAAACAGTTGCAGCATTTAATACTCGCCAGAAATCAATTTGACGGAGAAATCCCGTCTGGTATGTGGTCAAGGATGGATAATTTACTTCAACTCGATCTCTCATCCAACGATTTCAGTGGATCGATTCCGGAGGATTTGGGGGAACTGAAGACACTTACCGGTACGCTGAACCTGTCCTTCAATCATTTATCGGGTAAAATTCCGAAGACTCTTGGAGATTTGCCGGTGACGGTGAGTTTCGACCTTCGGAGCAACAATCTGAGCGGAAGCATACCACAGACGGGTTCCTTCGCGAATCAGGGACCGACTGCATTTCTCAATAATCCCGACTTGTGCGGATTTCCTCTTCAGAAATCTTGTGGGAATTCAGAACGTGGCTCACCGGGTAATCCGGATTCGAAGCCATCTTACATTGCTCCTAGAAAAGGATTGAGCGCCGGACTAATCATTCTCATCTCAGCCGCCGACGCCGCCGGAGTAGCGTTTATCGGTCTGATAATAGTATACATATATTGGCGAAGGAAGGACGATTCGAACGGCTGTAGCTGTACGGCCAAAAGAAAATTCGGTGGGAACCAGAAAGATCTCTGCGGTTTTCCTTGTATGAATGGACAAGATAAGAATGAGGAGTCCGAAATGGAGGAACCGGAGAACAGTGACAGAAGCAAAGAAGAAGGAGGGCTTGTGGCCATAGACAAAGGCTTTACGTTCGAGCTCGACGAGCTACTGAGAGCATCAGCCTATGTGCTGGGAAAGAGTGGACTAGGAATTGTGTACAAAGTGGTCCTTGGAAATGGGATTCCGGTGGCCGTACGGCGGGTGGGCGAAGGCGGAGAACAGAGGTATAAAGAGTTCGTGGCGGAGGTGCAGGCCATTGGAAGGGTAAAGCATCCCAATATCGTGAAACTGAGAGCTTATTATTGGGCGCCGGATGAGAAGCTTCTGATCAGTGATTTTATCTCCAATGGAAACTTGGCCTCTGCACTTCGCGGGAGAAACGGGCAGCCATCTTCAGTGCTTTCATGGTCAACGAGACTGAGAATTGCCAAGGGAACCGCAAGGGGGTTGGCTTATCTACACGAATGCAGCCCAAGAAAATTCGTCCATGGCGACATCAAGCCCTCCAACATTCTCCTCGACAACGATTTCCAGCCCCACATCTCTGACTTCGGCCTCAACCGTTTGATCAGCATCACCGGCAACAACCCCTCCTCCTCCGGCGGCCTCATTGGCGGCGCCTTCTCTTATCTCAAGTCCGTCCAAACCGAACGCACCAACAACTACTGCGCGCCGGAAGCCCGTGCCCCTGGCGGTCGCCCCACCCAAAAATGGGACGTCTATTCCTTCGGAGTCATGGTCCTCGAATTGCTCACCGGAAAGTCACCGGAGCTTTCTCCCAACACGTCGACTTCTTTGGAGATTCCAGATTTGGTGAGATGGGTCAGAAAAGGATTTGAAGAAGCAAAGCCATTGTCGGATTTGGTCGACCCTGCTCTGCTACAAGAAGTACATGCCAAGAAAGAGGTCCTCGCCGTATTCCACGTGGCGCTCGCTTGTACAGAGAGCGACCCGGAACTCCGGCCCAGAATGAAAACAGTGTCAGAGAGTTTCGACAGGATGGGATCGTAA 2142 50.0 MMEKNLLFLVLDLVLFFHFQVSFRAFSLSPDGLSLLSLKSAVDQSPDSSVFSDWNEDDSTPCRWSGISCMNVSGDSRVVGIALSGKNLHGYIPSELGSLVYLRRLNLHNNNFYGSIPEQLFNATSLHSLFLYSNNLSGSFPPSICNIPRLQNLDLSNNSLAGPIPDELKNCKQLQHLILARNQFDGEIPSGMWSRMDNLLQLDLSSNDFSGSIPEDLGELKTLTGTLNLSFNHLSGKIPKTLGDLPVTVSFDLRSNNLSGSIPQTGSFANQGPTAFLNNPDLCGFPLQKSCGNSERGSPGNPDSKPSYIAPRKGLSAGLIILISAADAAGVAFIGLIIVYIYWRRKDDSNGCSCTAKRKFGGNQKDLCGFPCMNGQDKNEESEMEEPENSDRSKEEGGLVAIDKGFTFELDELLRASAYVLGKSGLGIVYKVVLGNGIPVAVRRVGEGGEQRYKEFVAEVQAIGRVKHPNIVKLRAYYWAPDEKLLISDFISNGNLASALRGRNGQPSSVLSWSTRLRIAKGTARGLAYLHECSPRKFVHGDIKPSNILLDNDFQPHISDFGLNRLISITGNNPSSSGGLIGGAFSYLKSVQTERTNNYCAPEARAPGGRPTQKWDVYSFGVMVLELLTGKSPELSPNTSTSLEIPDLVRWVRKGFEEAKPLSDLVDPALLQEVHAKKEVLAVFHVALACTESDPELRPRMKTVSESFDRMGS 713
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 9813402 9817271 + CmoCh04G019220.1 Cmo04g01922 380897
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g01922 713 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 13 712 - -
Cmo04g01922 713 SUPERFAMILY L domain-like 31 288 - -
Cmo04g01922 713 SUPERFAMILY Protein kinase-like (PK-like) 420 705 IPR011009 -
Cmo04g01922 713 Pfam Leucine rich repeat 102 160 IPR001611 GO:0005515
Cmo04g01922 713 Gene3D Ribonuclease Inhibitor 195 289 IPR032675 -
Cmo04g01922 713 PANTHER RECEPTOR PROTEIN KINASE-LIKE PROTEIN ZAR1 13 712 - -
Cmo04g01922 713 SMART serkin_6 419 708 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo04g01922 713 Gene3D Ribonuclease Inhibitor 30 192 IPR032675 -
Cmo04g01922 713 CDD STKc_IRAK 421 711 - -
Cmo04g01922 713 Gene3D Phosphorylase Kinase; domain 1 406 490 - -
Cmo04g01922 713 Pfam Protein kinase domain 420 643 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo04g01922 713 Gene3D Transferase(Phosphotransferase) domain 1 491 713 - -
Cmo04g01922 713 ProSiteProfiles Protein kinase domain profile. 415 713 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo04g01922 713 ProSitePatterns Serine/Threonine protein kinases active-site signature. 538 550 IPR008271 GO:0004672|GO:0006468
Cmo04g01922 713 Pfam Leucine rich repeat N-terminal domain 29 69 IPR013210 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo04g01922 Cmo18g00696 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00082 Cmo-Chr3:1229965 Cmo04g01922 Cmo-Chr4:9813402 9.09E-62 dispersed
Cmo04g01562 Cmo-Chr4:7987916 Cmo04g01922 Cmo-Chr4:9813402 0 dispersed
Cmo04g01922 Cmo-Chr4:9813402 Cmo18g01006 Cmo-Chr18:10958254 0 dispersed
Cmo18g00696 Cmo-Chr18:8827292 Cmo04g01922 Cmo-Chr4:9813402 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74289 PF00069 Pkinase 4.50E-33 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g01922 - - csv:101220493 1327.0