Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g01932 ATGGCCTCCGCTTGTGCTTCTTCCGCCATCGCCGCGGTGGCGATTTCTTCTTCCAGTTCCCAGAAGAATGGATGCCCCAAGGTTTCTAATTTCCTAACCGGCAAGAGGCTGAGGCTGAGAAAGTACACTGCTGCGGCTGTTGCTCCTCGATCAGCTCCGGTGTGCGCCGCCGCCGACCCCGATAGACCCCTCTGGTTCCCCGGCAGCACCCCTCCCCCATGGCTCGACGGCAGCCTCCCCGGTGACTTTGGCTTTGACCCACTTGGTCTCTCTTCTGATCCGGAGAGCCTGAGATGGAACCAGCAAGCAGAGCTGGTGCACTGCCGGTGGGCAATGTTGGGCGCCGCTGGGATTTTCATCCCGGAATTCTTGACAAAGATCGGAATTCTTAACACCCCGTCGTGGTACACTGCCGGAGAATTGGAATACTTCACCGATACGACCACTCTGTTCATTGTGGAACTCATTTTCATCGGTTGGGCCGAGGGTAGACGATGGGCCGACATTCTGAAACCCGGTTGCGTCAATACCGACCCAATCTTCCCCAACAACAAGCTAACCGGAACCGACGTCGGGTACCCAGGTGGCCTGTGGTTCGACCCACTCGGTTGGGGTAGCGGGTCACCCGAAAAAATCAAGGAATTGAGAACGAAAGAGATCAAGAACGGGCGACTGGCTATGTTGGCGGTGATGGGCGCGTGGTTCCAACACATTTACACCGGCACCGGTCCCATCGACAACCTTTTCGCTCACCTTGCCGATCCCGGCCACGCCACTGTCTTCGCCGTGAGTTTTTAA 798 57.14 MASACASSAIAAVAISSSSSQKNGCPKVSNFLTGKRLRLRKYTAAAVAPRSAPVCAAADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLSSDPESLRWNQQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAGELEYFTDTTTLFIVELIFIGWAEGRRWADILKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATVFAVSF 265
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 9872268 9873331 + CmoCh04G019320.1 Cmo04g01932 380907
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g01932 265 SUPERFAMILY Chlorophyll a-b binding protein 58 262 - -
Cmo04g01932 265 Pfam Chlorophyll A-B binding protein 71 237 IPR022796 -
Cmo04g01932 265 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 1 263 IPR001344 GO:0009765|GO:0016020
Cmo04g01932 265 PANTHER CHLOROPHYLL A-B BINDING PROTEIN, CHLOROPLASTIC 1 263 - -
Cmo04g01932 265 Gene3D Chlorophyll a/b binding protein domain 72 257 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01932 Cmo-Chr4:9872268 Cmo10g00213 Cmo-Chr10:948889 1.59E-76 dispersed
Cmo11g00756 Cmo-Chr11:3676214 Cmo04g01932 Cmo-Chr4:9872268 4.75E-95 transposed
Cmo11g01491 Cmo-Chr11:10562285 Cmo04g01932 Cmo-Chr4:9872268 8.96E-35 transposed
Cmo15g00609 Cmo-Chr15:2958942 Cmo04g01932 Cmo-Chr4:9872268 2.16E-34 transposed
Cmo18g00628 Cmo-Chr18:8027006 Cmo04g01932 Cmo-Chr4:9872268 6.89E-151 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g01932 K08908 - csv:101214055 506.908