Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g01938 ATGAAAGGTGGAAACGGCGTCGTTGTGGTGGTGGTGGTGGTTTTGGTGGGGCTGTTGTGTTTGGCTGGGGCAGAAGAAGAGAACCTGAAGGAGGAGTGCAGCAATGACTTCCAGCAGGTGGTGAGCTGCTTCGAATTCGCGACGGGGAAGGCGGCGGCGCCGAGCAAGGAATGCTGTGACTCGATAGAGGGCATAAAAGAGAGGAAGCCGAAGTGCCTGTGTTTCTTCATACAGCAGACGCATAACGGGAACCAGCAGATAAAGAGTATGGGCATTCTAGAGACCAAGCTTCTTCAGCTCCCTTCTGTCTGTCAGTTGAAGAACTCCAGCGTCAGCTATTGCCCTAAGCTTCTGGGCTTGCCAGCAAATTCGCCCGACGCTGCTATTTTTAGCAATATCACGACGCCAGCAACACCGGCGGCGACGACGACGAGGACGAGTCCCGGCGGAAGTTCCGGAACTAGGATGGTAGCCAATTCTCCCGCCGGTCTACTGGCGGTGGCTGTGGCGGTCATCGTTTTCACAGCATTCCTTCCGCCGATCACCACATTCACTCAGCTATTCCGAGTCCAAGAACAAGATCTCCCCGTCCTCGCCTTTCTGATAGGTCGCAATATGTCGCAGGTTGATAGCAGGAATTCATCTGCAGCCAAACGTGCTAGAACTGATGGTAGCCGAAGGGAAGATGATTGGACTTGTCCTAGTTGTGGAAACGTCAATTTTTCGTTTAGAACAACTTGCAATATGCGCAATTGCACTCAGCCACGTCCTGCTGATCATAACTCTAAATCTGCTGCCAAGCCCGTTCAAGCACTTCAGGGTTACTCTTATTCTGCCCCTTACATGGGTTCAGGTGTACCCTCTTCAATGTATCCTGGTGTACCACCATATGGTTCTTCCATATTCAACGGTTCATCTATACCTCCCTATGATGTGCCATTTTCTGGGGGATCAGCATATCATTACAACTACGGCAGCCGGTTATCTGCAGGCAGTCCCTATAGACCCTTGCACCTATCTGGGCCTCCACCTTATTCAAGTGGATCTATGATGGGAAATAGTGCAGTGTATGGTATGCCACCCATAATGGATCGCTATGGCATGGCTTTGCCAATGGGCCCTGGCACCATGGGTCCAAGGCCAGGTTTTTTTCCAGATGATATGTCTCAGAAGAAGGGTGCAGATGCTACTCGCGACAATGATTGGGCATGCCCAAAATGTGGAAATATCAACTTCTCATTTAGAACTGTCTGTAACATGAGAAAGTGCAATACTCCAAAGCCCGGGTCACAGGGTTCCAAAAATGACAAAACTACTAAGCAAAAGACGCCAGAGGGTAGCTGGAAGTGCGAGAAATGTAACAACATAAATTATCCATTCCGAAACAAGTGCAATAGACAAAATTGCGGAGCAGACAAGCCAGCGGGTTCAGAGAAATCTTCATCACCTGCACAGGAAGAAAATGATCAGTGA 1473 49.69 MKGGNGVVVVVVVVLVGLLCLAGAEEENLKEECSNDFQQVVSCFEFATGKAAAPSKECCDSIEGIKERKPKCLCFFIQQTHNGNQQIKSMGILETKLLQLPSVCQLKNSSVSYCPKLLGLPANSPDAAIFSNITTPATPAATTTRTSPGGSSGTRMVANSPAGLLAVAVAVIVFTAFLPPITTFTQLFRVQEQDLPVLAFLIGRNMSQVDSRNSSAAKRARTDGSRREDDWTCPSCGNVNFSFRTTCNMRNCTQPRPADHNSKSAAKPVQALQGYSYSAPYMGSGVPSSMYPGVPPYGSSIFNGSSIPPYDVPFSGGSAYHYNYGSRLSAGSPYRPLHLSGPPPYSSGSMMGNSAVYGMPPIMDRYGMALPMGPGTMGPRPGFFPDDMSQKKGADATRDNDWACPKCGNINFSFRTVCNMRKCNTPKPGSQGSKNDKTTKQKTPEGSWKCEKCNNINYPFRNKCNRQNCGADKPAGSEKSSSPAQEENDQ 490
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 9885526 9893373 + CmoCh04G019380.1 Cmo04g01938 380913

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g01938 490 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 32 114 IPR036312 -
Cmo04g01938 490 Gene3D - 435 477 - -
Cmo04g01938 490 Gene3D - 389 430 - -
Cmo04g01938 490 Gene3D - 219 259 - -
Cmo04g01938 490 MobiDBLite consensus disorder prediction 425 448 - -
Cmo04g01938 490 Pfam Probable lipid transfer 25 114 IPR016140 -
Cmo04g01938 490 Gene3D - 30 111 IPR036312 -
Cmo04g01938 490 PANTHER ZINC FINGER PROTEIN 210 480 - -
Cmo04g01938 490 PANTHER OS08G0521400 PROTEIN 210 480 - -
Cmo04g01938 490 Pfam Zn-finger in Ran binding protein and others 444 474 IPR001876 -
Cmo04g01938 490 Pfam Zn-finger in Ran binding protein and others 227 249 IPR001876 -
Cmo04g01938 490 Pfam Zn-finger in Ran binding protein and others 399 428 IPR001876 -
Cmo04g01938 490 MobiDBLite consensus disorder prediction 211 230 - -
Cmo04g01938 490 MobiDBLite consensus disorder prediction 469 490 - -
Cmo04g01938 490 SMART aai_6 33 114 IPR016140 -
Cmo04g01938 490 MobiDBLite consensus disorder prediction 216 230 - -
Cmo04g01938 490 SUPERFAMILY Ran binding protein zinc finger-like 394 430 IPR036443 -
Cmo04g01938 490 SUPERFAMILY Ran binding protein zinc finger-like 222 259 IPR036443 -
Cmo04g01938 490 CDD AAI_LTSS 42 106 - -
Cmo04g01938 490 SUPERFAMILY Ran binding protein zinc finger-like 439 476 IPR036443 -
Cmo04g01938 490 SMART zf_4 229 255 IPR001876 -
Cmo04g01938 490 SMART zf_4 446 472 IPR001876 -
Cmo04g01938 490 SMART zf_4 400 426 IPR001876 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g01938 - - - cmax:111492911 580.867
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01938 Cmo-Chr4:9885526 Cmo08g00555 Cmo-Chr8:3410305 4.02E-14 dispersed
Cmo18g00633 Cmo-Chr18:8050046 Cmo04g01938 Cmo-Chr4:9885526 0 transposed
Cmo18g00632 Cmo-Chr18:8047695 Cmo04g01938 Cmo-Chr4:9885526 7.06E-80 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1257 . . . . . Bpe10g00764 . Bma15g00258 Cmo04g01938 . . Cma18g00689 . Car18g00639 Sed01g1192 Cpe09g00596 Cpe01g01622 Bhi07g01933 Tan04g0039 Cmetu04g2908 Lac13g0044 Hepe10g1508 . . . . . . . . . . . . . Lsi04g00689 . . Cme10g00672 . . . . . . . . . . . Cma04g01842 . Car04g01847 . . . . . . . . . . Cla11g01331 Cam11g1390 Cec11g1412 Cco11g1408 Clacu11g1548 Cmu11g1369 Cre11g1787 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005402 3 1 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo04g01938 Cmo_Chr04 FPKM 2.197115 1.051485 1.958573 1.536263 2.866037 3.166304 3.546312 2.073159 2.926361 3.148503