Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g01939 ATGGAGTGGAATGCAAGACCCCCTTTACAATGGGACTGGGACAACTTAACTGTACTTAATCCCAGATATTCTGAACATGGTGATGTATTACATCCAACTATCTTTCAAACTAAACATGGAATTAACTTTGGACCTTCCAATTCAGCTGGAGATGACAGAACTACTGGTGGTCCTTTTTTCAAGTTGGGGCAAACTTCTCCGAAAATCTCAAAATCAGTTTCCACAAATTCCTCGTCTTTTGAGAAAAGTAGAACTACCAAATTCACGCTTGAGGGGTTTGAGCCAACTTTAGAAGATTCTTGCAATAAAAAAGAATTTGTTGAGGCTGAAGTGGTCAGCACCTATGGAACACCGGAGACTTCAACCTGCTCCTGCGAGCCAATGCTTAGTCTGAAGCTTGGTAAGCAGGCATACTTTGAAAATGCTAGTGCTGTAAATCTTACAAAGCCATCTGCTTTGATGGTGGAATCCCGTGCTACTCGAAAAAGGGGCCAGAATACACCATCCGCTCACTGCCAGGTTGAAGGTTGTAACATAGATATTTCAAATGTTAAGGATTATTATCGCAAACATAGAGTTTGTGAAAGTCACTCCAAATCTCCTAAGGTCATCATTGGAGGCTTTGAGCGTCGGTTTTGTCAACAATGTAGTAGGTTTCACAGCATATCTGAGTTTGATGGGAAGAAACGAAGCTGCCGTAGGCGTCTCTCCAATCATAATGCTCGACGACGTAAGCCACAATCAAAGGTTGTCAGTTTGAATCCCGCAAGGCTGTCTTCTTGGGATTTTGAGAACCGGCAGATTGACATTTTCTCTGATAAATTATCACTCATCTATCCTACACCTAATGAAAAGTCAGCATGGGAGTCTGCATTCAGCTCCAGACACCCACAATGTGGCAAGTATATATCAAAGCCTGAACCAACATATGGTTCGATCGGGCAGCTAAACGTGTCTGGGGATGAGATGTGTTATGTGCATGCTATGCCTTATCACGATAATACCAGTAAGGCCGTCCCCTTCAAAGGAGCTGCAACCAAGATTCTTGATCCAGCACAGGATCTTCAACGTGCTCTCTCTCTTCTGTCAACCGATACAAAGGGTCCATACGAGGCAAGGCTTTTTGCTCCTGACAACCCTAATCGTCTTGTTAACCCTAACTATGCAAACCAGCCCTCCATATCACAGTCGCCATTGAATCTAGAAATTCAAACTTTGCCCTTCGCTTCAGTAGATTCACAATCCTGGGGCAATGGACATCATCACCCTATCGAATTGCAGATGCAAATCCACCATCCAAACATTGAAGGAGGAAACAATCTCTTTCAGGACTTTCAGGTCTTCAAAACACCATGCGAGATTGGGATGTTCTCCAACCAAATAATACCTAAAACGGCTCCTTTTCTTGCTTTTTCACTGATTTTCTTCTGTTCCGACCGTCATATTTTCCGTTTCCTCTAA 1461 43.12 MEWNARPPLQWDWDNLTVLNPRYSEHGDVLHPTIFQTKHGINFGPSNSAGDDRTTGGPFFKLGQTSPKISKSVSTNSSSFEKSRTTKFTLEGFEPTLEDSCNKKEFVEAEVVSTYGTPETSTCSCEPMLSLKLGKQAYFENASAVNLTKPSALMVESRATRKRGQNTPSAHCQVEGCNIDISNVKDYYRKHRVCESHSKSPKVIIGGFERRFCQQCSRFHSISEFDGKKRSCRRRLSNHNARRRKPQSKVVSLNPARLSSWDFENRQIDIFSDKLSLIYPTPNEKSAWESAFSSRHPQCGKYISKPEPTYGSIGQLNVSGDEMCYVHAMPYHDNTSKAVPFKGAATKILDPAQDLQRALSLLSTDTKGPYEARLFAPDNPNRLVNPNYANQPSISQSPLNLEIQTLPFASVDSQSWGNGHHHPIELQMQIHHPNIEGGNNLFQDFQVFKTPCEIGMFSNQIIPKTAPFLAFSLIFFCSDRHIFRFL 486
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 9894489 9896934 - CmoCh04G019390.1 Cmo04g01939 380914

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g01939 486 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 39 461 IPR044817 GO:0003677
Cmo04g01939 486 SUPERFAMILY SBT domain 170 251 IPR036893 GO:0003677|GO:0005634
Cmo04g01939 486 Pfam SBP domain 172 245 IPR004333 GO:0003677
Cmo04g01939 486 ProSiteProfiles Zinc finger SBP-type profile. 169 246 IPR004333 GO:0003677
Cmo04g01939 486 Gene3D - 163 233 IPR036893 GO:0003677|GO:0005634
Cmo04g01939 486 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 2 39 461 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g01939 - - - cmax:111492685 906.36
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01939 Cmo-Chr4:9894489 Cmo06g00988 Cmo-Chr6:7783479 1.14E-37 dispersed
Cmo18g00634 Cmo-Chr18:8056598 Cmo04g01939 Cmo-Chr4:9894489 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1258 . . . . . Bpe10g00763 . Bma15g00259 Cmo04g01939 . . Cma18g00688 . Car18g00638 . Cpe09g00597 Cpe01g01623 . . . . . . . . . . . . . . . . . . . . . . Blo06g00809 . . . . . . . . . . Cma04g01843 . Car04g01848 . . Cpe03g01229 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014120 1 0 0 1 1 0 2 0 0 0 0 0 2 0 0 2 0 2 2 0 0 1 1 1 1 0 1 2 1 2 23
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9665 PF03110 SBP 2.10E-31 No_clan Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo04g01939 Cmo_Chr04 FPKM 0.095238 0.747864 0.0 1.603752 1.440305 0.0 4.01985 2.662322 3.525101 2.854914