Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g01953 ATGGAACTTACAGATATGCAGCAAAGCAACAAGCAGCAGCAGCAGCACCATCATCACCATTCAAACCAGAACCAGAAGCCGCCGCCGCCGCCGCAGCAGCAGCAGCATCATGTGGTCCCTTTCGATGGCAGATCAGCCGCTGCAGGAGGTGGTCCACCGTTCATGGGCTCCATCTCCACTCTTGTCTCCCTCCCTCCTCCTTCTTCCTCTGCTTCTAATTCTTCTTCTAATTCTTCTTCTTCTTCCTCTTCCTCCGCCGTTGCTCCGCCTCCTCACCTCCTCGATGCCTCACTCGTCATCGCTACCAGATCCGATACCACCACTAATCCTTCTCCCCGATCTGCCTCTGCTTCCGCCTCCACCTCCAACGCTAACGCCCTCAAGCGTTCCACTAAAGATCGGCATACTAAGGTCGACGGTCGTGGCCGACGCATCCGTATGCCGGCTACTTGTGCGGCTAGGGTTTTCCAATTGACCCGCGAATTGGGGCATAAGTCCGACGGCGAGACCATCGAGTGGCTTCTCCAGCAAGCTGAGCCTGCGATTATTGCCGCCACTGGTACTGGAACAATCCCTGCTAATTTCTCCTCCTTGAACATTTCCATTCGTAGCAGTGGATCCACTCTCTCTGCTCCTCCCTCAAAATCTGCTCCTCATTCCTTCCATGGCGCTTTGGCTCTCGCTCATCATCCCAACGCCTACGAAGAAGGCTTCGCTCATGCTGCTCTGCTAGGGTTTCACCACCACCACCACCATCAGCAACAGCAGCAGCACCACCACCACCAACTTAATCTAATGACCGCCGATCAAATTGCCGACGCTCTCCCCGGCGGCGAGAGCGGCGGCGGCGGAGGAGGAGGAGACTCGACCGATAACTATATGAGAAAACGCTACAGAGAAGACCTGTTTAAAGAGGACACGCAATCTCCAGGGGAGAGCAGCGGCGGTGCTGGATCTCCCAAAGCGATTAAGAGCGATCTGCAATTAGAGAAACAACAATCGCAGCAACAATCAGCATCCTCGAGCCTACTTCGTCCTGCGACGGCGATGTGGGCCGTCGCTCCAAGCAGTGGAGCGAGCAACACGTTTTGGATGTTGCCAGTAACAACAGGATCAGGCGGAGCAAATGTAGGAAGCTCTGGAGCAAGCGGTGGTCCAATGGAAGCACAAATGTGGCCATTCTCAACGAGTGCAAACACATTGCAGGCTCCATTGCATTTCATGCCAAGATTCAACATCCCTGGAGGCGTCGAAATTCAGGCGGCAGGTGCGGCAGCAGGAGGCGGAGGAAGAGCCGGCCAATTACAACTCGGTTCCATGCTAATGCATCAACAACAACAACAGCAACAGCAACAGCAACAACAACAGCTTGGGCTGGGAGTATCAGAGTCCAATTTGGGAGTGTTAGCAGCTCTGAATGCTGCGTATTCCAGAGGCGGATTCAATGCTAATTCAGATCATCACCATAATCATCATCCATTGGAGCATCATTCCAACGCACCACAGCCTCACGCAACCGATAGTGGGGACGAAGATCCAAAAACTTCCCAGTGA 1554 53.99 MELTDMQQSNKQQQQHHHHHSNQNQKPPPPPQQQQHHVVPFDGRSAAAGGGPPFMGSISTLVSLPPPSSSASNSSSNSSSSSSSSAVAPPPHLLDASLVIATRSDTTTNPSPRSASASASTSNANALKRSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFSSLNISIRSSGSTLSAPPSKSAPHSFHGALALAHHPNAYEEGFAHAALLGFHHHHHHQQQQQHHHHQLNLMTADQIADALPGGESGGGGGGGDSTDNYMRKRYREDLFKEDTQSPGESSGGAGSPKAIKSDLQLEKQQSQQQSASSSLLRPATAMWAVAPSSGASNTFWMLPVTTGSGGANVGSSGASGGPMEAQMWPFSTSANTLQAPLHFMPRFNIPGGVEIQAAGAAAGGGGRAGQLQLGSMLMHQQQQQQQQQQQQQLGLGVSESNLGVLAALNAAYSRGGFNANSDHHHNHHPLEHHSNAPQPHATDSGDEDPKTSQ 517
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 9996727 9998280 + CmoCh04G019530.1 Cmo04g01953 380928
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g01953 517 MobiDBLite consensus disorder prediction 128 144 - -
Cmo04g01953 517 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 18 517 IPR005333 GO:0003700
Cmo04g01953 517 MobiDBLite consensus disorder prediction 292 307 - -
Cmo04g01953 517 ProSiteProfiles TCP domain profile. 131 185 IPR017887 -
Cmo04g01953 517 MobiDBLite consensus disorder prediction 326 342 - -
Cmo04g01953 517 Pfam TCP family transcription factor 130 260 IPR017887 -
Cmo04g01953 517 MobiDBLite consensus disorder prediction 61 88 - -
Cmo04g01953 517 MobiDBLite consensus disorder prediction 481 517 - -
Cmo04g01953 517 MobiDBLite consensus disorder prediction 1 90 - -
Cmo04g01953 517 MobiDBLite consensus disorder prediction 273 342 - -
Cmo04g01953 517 PANTHER TRANSCRIPTION FACTOR TCP8 18 517 - -
Cmo04g01953 517 MobiDBLite consensus disorder prediction 484 498 - -
Cmo04g01953 517 MobiDBLite consensus disorder prediction 104 127 - -
Cmo04g01953 517 MobiDBLite consensus disorder prediction 104 144 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01729 Cmo-Chr4:8756861 Cmo04g01953 Cmo-Chr4:9996727 3.98E-45 dispersed
Cmo04g01953 Cmo-Chr4:9996727 Cmo18g01183 Cmo-Chr18:11881839 2.75E-47 dispersed
Cmo04g01953 Cmo-Chr4:9996727 Cmo10g00203 Cmo-Chr10:910288 3.67E-47 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9666 PF03634 TCP 3.60E-39 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g01953 - - csv:101222378 498.434