Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cmo04g01987 | ATGGATGGAAATGGTGGGATGAAGTGGACTGGAATCCGCCATTTTGTGAGGCTGAAACAGACTCTCCAACACTGGCAAGCTGTCACAGTTAACCCGAAATCCCAAGCATCCAATAAAAATCAAAGCCAAAGCCAAAATCATAATCGTGGGATCCTTTCACCAGCAATCAACAAAAGGCTGATGAATGCCATGTGTTGTGATTCGGATGAGGAGAGCTGCCAGAGCCCTGAGCATCTATCCGATGTCCCGAAAGGGTACTTGGCTGTTTATGTTGGGCCGGAGCTTCGTAGGTTTATCATTCCCACCAGCTATCTTAGCCATTTGGTGTTCAAGGTGTTGCTGGAAAAGGCAGAGGAGGAGTATGGATTCGATCACAGTGGTGGGCTAACACTCCCATGCGAGATCGAGACCTTCAAATACCTTCTCAAGTACATGGAGGTTCAGCAGCTCGATGATCATCCTGATGAGCAGACCCCAGCTGAGAGTTCTTTAAGCAAGGAAGGATAA | 507 | 47.73 | MDGNGGMKWTGIRHFVRLKQTLQHWQAVTVNPKSQASNKNQSQSQNHNRGILSPAINKRLMNAMCCDSDEESCQSPEHLSDVPKGYLAVYVGPELRRFIIPTSYLSHLVFKVLLEKAEEEYGFDHSGGLTLPCEIETFKYLLKYMEVQQLDDHPDEQTPAESSLSKEG | 168 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 10292259 | 10294258 | + | CmoCh04G019870.1 | Cmo04g01987 | 380962 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cmo04g01987 | 168 | PANTHER | BNAA02G05090D PROTEIN | 7 | 157 | - | - | |
| Cmo04g01987 | 168 | PANTHER | AUXIN-INDUCED PROTEIN-LIKE-RELATED | 7 | 157 | IPR003676 | GO:0009733 | |
| Cmo04g01987 | 168 | Pfam | Auxin responsive protein | 58 | 144 | IPR003676 | GO:0009733 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cmo04g01987 | Cmo-Chr4:10292259 | Cmo06g00005 | Cmo-Chr6:19348 | 1.45E-89 | dispersed | |
| Cmo17g01369 | Cmo-Chr17:10631575 | Cmo04g01987 | Cmo-Chr4:10292259 | 4.56E-16 | dispersed | |
| Cmo04g01987 | Cmo-Chr4:10292259 | Cmo01g01637 | Cmo-Chr1:12425023 | 7.73E-26 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cmo04g01987 | K14488 | - | csv:101207913 | 246.514 |