Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g01991 ATGGTGTTCCAAGATTTCGACCAAATCTCTGAACGCCGACGACTTGAGAGGGCACGTAAATTCCGCCAGAGAGTCATTATAACCGTGGTGTTAGCCACCGTGATCATCCTCCTCGTAGCCGCCGCCGTCTTCATCCAGGTCTCCCCTGCTCCCTCCTCCTCCTCCAAAACCTCCAACAAAGATGGAAAATCCAAGAAACATCCCAAGTCCAACGCCGACACCAAAACCGACACCGACTCCAAGGATGCGTCCAGTGCTGAGAAAATGATTGTGATGATATGCAATTCCACAGACTTCAAGGAGAAATGCGAGAGCATTTTGAAGGACGGCTTGAAGGCGAACCCCAAATCCTCTGACCCCAAAGAGCTGATTAAGCTGGCCATCACCGCCGCCGCGGCTGAGGTCAAATCCGCTTTGAAAAAGGCCAATAACTTGAAATTCGCGACGCCGGAGGAGAAGGGTGCGTTCGAGGACTGTAAGGTTTTGATGGAAGACGCGGTGGAGGAATTAGAGATGTCTATGACGGCGGTGAGTAAGAAGAATCAGGGGAAGCTGACGGAGAAGACGACGCCGGATTTGAATAACTGGCTGAGTGCGGTGATGTCGTATCATGAGACTTGTGTTGATGGGTTCCCTGATGGGTCTAAGATGAAGCAGGAAATGGAGAAGATTGGGAAGAGTGGGAAGGAATTGACGAGTAATTCCTTGGCCATGATATCGCAGGTGGCTACGTTCTTCTCTAAGTTTGAGTCTGAGGGGCCTGGGGAGGGTGCTGCAACGCGACGGCGTTTAATGGACCAGGATGAACTTCCAAGCTGGATGGATAGCAATGAGCGGAGGATGTTGAAGGGCGCTACGGCGGGGGATAAGCCTACGCCTAACGTTGTGGTTGCCCAAGATGGGTCTGGCAATTTTAAAACTATTAATGAAGCCTTGGCTGCCATGCCTGCCAAGTATGATGGACGGTACGTGATCTATCTAAAGGAAGGAATCTACGAGGAGGCAGTGGTGATCACCAAAAAGATGGTAAATGTGACAATGTACGGAGATGGGTCACAAAAGAGCTTGATAAGTGGAAACAAGAACTTCAAGGATGGAGTTAGAACATTCCAAACCGCATCTTTCGTGGCACTTGGAGACGGCTTCTTCGCGCAAGCCATAGGATTCAGAAACACAGCAGGTCCAGAGAAGCACCAAGCCGTAGCAGCAAGAGTCCAAGCAGACCGAGCCATATTCCTAAACTGCCGCTTCGACGGGTACCAGGACACGCTCTACGCACAAGCCCACCGCCATTTCTACAGAAGCTGCCTAATAACAGGCACCATCGACTTCATCTTCGGAGACGCCGCCGCCATTTTCCAAAACTGCAACATGATGGTGAAAAAGCCGTTAGACAAGCAACAGAACATAGTGACAGCACAGGGCAGAAGCGACAGGCACGAAACCACAGCCATAGTGCTGCAAAGGTGCAAGATTTTACCCGACAAGACACTGGAGGCAGTGAAGTCGCAGTTCAAAAGCTACTTGGGGAGGCCGTGGAAGGAGTACTCCAGAACCATCGTAATGGAGTCCACGATTGAGGACATAATTCACCCGGAGGGGTGGTTGGCTTGGGAAGGGGATTTTGCACTGAAGACGTTGTACTATGCGGAGTTTAACAACGATGGGCCTGGGGCCAAGACCGAGGGCAGGGTGAAGTGGCCTGGGCATAAGGTGATTGATAAGGAGGAGGCTGCCAAGTTTACGATAGGAAGTTTTCTAGAGGTGGATTGGATCCAGAGCACGTCGGCTCCAGTTCATGTCGGCCTATTTTGA 1815 51.13 MVFQDFDQISERRRLERARKFRQRVIITVVLATVIILLVAAAVFIQVSPAPSSSSKTSNKDGKSKKHPKSNADTKTDTDSKDASSAEKMIVMICNSTDFKEKCESILKDGLKANPKSSDPKELIKLAITAAAAEVKSALKKANNLKFATPEEKGAFEDCKVLMEDAVEELEMSMTAVSKKNQGKLTEKTTPDLNNWLSAVMSYHETCVDGFPDGSKMKQEMEKIGKSGKELTSNSLAMISQVATFFSKFESEGPGEGAATRRRLMDQDELPSWMDSNERRMLKGATAGDKPTPNVVVAQDGSGNFKTINEALAAMPAKYDGRYVIYLKEGIYEEAVVITKKMVNVTMYGDGSQKSLISGNKNFKDGVRTFQTASFVALGDGFFAQAIGFRNTAGPEKHQAVAARVQADRAIFLNCRFDGYQDTLYAQAHRHFYRSCLITGTIDFIFGDAAAIFQNCNMMVKKPLDKQQNIVTAQGRSDRHETTAIVLQRCKILPDKTLEAVKSQFKSYLGRPWKEYSRTIVMESTIEDIIHPEGWLAWEGDFALKTLYYAEFNNDGPGAKTEGRVKWPGHKVIDKEEAAKFTIGSFLEVDWIQSTSAPVHVGLF 604
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 10400652 10403193 - CmoCh04G019910.1 Cmo04g01991 380966
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g01991 604 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 88 241 IPR035513 -
Cmo04g01991 604 CDD PMEI-like_3 93 244 - -
Cmo04g01991 604 TIGRFAM PME_inhib: pectinesterase inhibitor domain 85 242 IPR006501 GO:0004857
Cmo04g01991 604 Pfam Plant invertase/pectin methylesterase inhibitor 90 238 IPR006501 GO:0004857
Cmo04g01991 604 Gene3D - 292 604 IPR012334 -
Cmo04g01991 604 Pfam Pectinesterase 294 588 IPR000070 GO:0030599|GO:0042545
Cmo04g01991 604 ProSitePatterns Pectinesterase signature 2. 438 447 IPR033131 -
Cmo04g01991 604 MobiDBLite consensus disorder prediction 50 81 - -
Cmo04g01991 604 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 45-RELATED 15 602 - -
Cmo04g01991 604 Gene3D Invertase/pectin methylesterase inhibitor family protein 86 243 IPR035513 -
Cmo04g01991 604 PANTHER PECTINESTERASE 15 602 - -
Cmo04g01991 604 SUPERFAMILY Pectin lyase-like 291 590 IPR011050 -
Cmo04g01991 604 SMART PMEI_2 85 238 IPR006501 GO:0004857
Cmo04g01991 604 MobiDBLite consensus disorder prediction 59 81 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01991 Cmo-Chr4:10400652 Cmo06g00010 Cmo-Chr6:86808 0 dispersed
Cmo04g01991 Cmo-Chr4:10400652 Cmo08g01213 Cmo-Chr8:7701057 1.89E-173 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g01991 - - cmax:111492523 1101.27