Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo04g01997 | ATGGAGCTCACTACTCAAGATCATCCCATTCCCATCCCCATCCCTTTAAATAGTCGCTACGGTGGCCACGACCACGACCACGACCATGTCATCCATCACCATGACCCGTCCGCCGCTTGCAACCATATCATCGCGGCGGCAGTCAATGGCGGTAGCCCACTTCCATCTTCTCAGATGGAAGTCGAGCTTCACCATAATCATAACAACAGCAACAACAATAACAATAACACGAAGAAGCAGGTAAAATATAAGGAGTGTCTCAAAAACCATGCGGCCTCCATGGGAGGTAATGCCACAGATGGGTGTGGTGAGTTCATGCCGAGTGGAGAAGAAGGATCCATTGAAGCACTCACGTGTTCGGCTTGCAATTGTCATAGAAACTTCCATCGAAAAGAGATCGAGGGAGAACCCTACGATTGGCTCCACCACCCTCGACTCGGGAGGAAGCTCCTCGTCGGAGGGAAGAACATGATCGCCCCACCAGAGGCAGCTGCATTTGCGTATCCATCCGCGGCAGGGCCGGCGTTCATATCGTCTAGAGCACAACCCCACCACATGATAATGTCGTACAACATGCTCGGCGGGGGAGGTGGGCAGTCAGAGTCGGAGGAGCACGAGGAGGCGAGGGCGTACTCGGGGCCAATGATGAACAAGAAGCGATTCCGAACGAAGTTCACGGCGGAGCAAAAGGAGAAGATGCTGAGGTTTGCAGAGAAAGTTGGATGGAAGCTTCAGAAACAAGAGGAGAGTGTGGTGCAGCAATTCTGTGAAGAGATTGGAGTGAAGAGGAGAGTTCTTAAGGTTTGGATGCATAACAATAAGCACAATCTTGGGAAGAAGGATACCATTTCCCCTCCACATTCTCCTACTCCCTTAACTTAA | 882 | 51.36 | MELTTQDHPIPIPIPLNSRYGGHDHDHDHVIHHHDPSAACNHIIAAAVNGGSPLPSSQMEVELHHNHNNSNNNNNNTKKQVKYKECLKNHAASMGGNATDGCGEFMPSGEEGSIEALTCSACNCHRNFHRKEIEGEPYDWLHHPRLGRKLLVGGKNMIAPPEAAAFAYPSAAGPAFISSRAQPHHMIMSYNMLGGGGGQSESEEHEEARAYSGPMMNKKRFRTKFTAEQKEKMLRFAEKVGWKLQKQEESVVQQFCEEIGVKRRVLKVWMHNNKHNLGKKDTISPPHSPTPLT | 293 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 10543915 | 10544796 | + | CmoCh04G019970.1 | Cmo04g01997 | 380972 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo04g01997 | 293 | Pfam | ZF-HD protein dimerisation region | 80 | 133 | IPR006456 | - | |
Cmo04g01997 | 293 | PANTHER | ZINC-FINGER HOMEODOMAIN PROTEIN 2 | 29 | 280 | - | - | |
Cmo04g01997 | 293 | PANTHER | ZINC-FINGER HOMEODOMAIN PROTEIN 4 | 29 | 280 | - | - | |
Cmo04g01997 | 293 | TIGRFAM | ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain | 82 | 133 | IPR006456 | - | |
Cmo04g01997 | 293 | ProSiteProfiles | Zinc-finger ZF-HD dimerization-type profile. | 83 | 132 | IPR006456 | - | |
Cmo04g01997 | 293 | TIGRFAM | homeo_ZF_HD: homeobox domain, ZF-HD class | 218 | 274 | IPR006455 | - | |
Cmo04g01997 | 293 | Gene3D | - | 201 | 279 | - | - | |
Cmo04g01997 | 293 | SUPERFAMILY | Homeodomain-like | 210 | 279 | IPR009057 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo01g00824 | Cmo-Chr1:4412734 | Cmo04g01997 | Cmo-Chr4:10543915 | 1.32E-22 | dispersed | |
Cmo04g01997 | Cmo-Chr4:10543915 | Cmo06g00007 | Cmo-Chr6:34618 | 1.67E-135 | dispersed | |
Cmo04g01997 | Cmo-Chr4:10543915 | Cmo12g00418 | Cmo-Chr12:2570610 | 1.02E-62 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
9667 | PF04770 | ZF-HD_dimer | 1.20E-29 | No_clan | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo04g01997 | - | - | bhj:120068944 | 468.003 |