Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g01997 ATGGAGCTCACTACTCAAGATCATCCCATTCCCATCCCCATCCCTTTAAATAGTCGCTACGGTGGCCACGACCACGACCACGACCATGTCATCCATCACCATGACCCGTCCGCCGCTTGCAACCATATCATCGCGGCGGCAGTCAATGGCGGTAGCCCACTTCCATCTTCTCAGATGGAAGTCGAGCTTCACCATAATCATAACAACAGCAACAACAATAACAATAACACGAAGAAGCAGGTAAAATATAAGGAGTGTCTCAAAAACCATGCGGCCTCCATGGGAGGTAATGCCACAGATGGGTGTGGTGAGTTCATGCCGAGTGGAGAAGAAGGATCCATTGAAGCACTCACGTGTTCGGCTTGCAATTGTCATAGAAACTTCCATCGAAAAGAGATCGAGGGAGAACCCTACGATTGGCTCCACCACCCTCGACTCGGGAGGAAGCTCCTCGTCGGAGGGAAGAACATGATCGCCCCACCAGAGGCAGCTGCATTTGCGTATCCATCCGCGGCAGGGCCGGCGTTCATATCGTCTAGAGCACAACCCCACCACATGATAATGTCGTACAACATGCTCGGCGGGGGAGGTGGGCAGTCAGAGTCGGAGGAGCACGAGGAGGCGAGGGCGTACTCGGGGCCAATGATGAACAAGAAGCGATTCCGAACGAAGTTCACGGCGGAGCAAAAGGAGAAGATGCTGAGGTTTGCAGAGAAAGTTGGATGGAAGCTTCAGAAACAAGAGGAGAGTGTGGTGCAGCAATTCTGTGAAGAGATTGGAGTGAAGAGGAGAGTTCTTAAGGTTTGGATGCATAACAATAAGCACAATCTTGGGAAGAAGGATACCATTTCCCCTCCACATTCTCCTACTCCCTTAACTTAA 882 51.36 MELTTQDHPIPIPIPLNSRYGGHDHDHDHVIHHHDPSAACNHIIAAAVNGGSPLPSSQMEVELHHNHNNSNNNNNNTKKQVKYKECLKNHAASMGGNATDGCGEFMPSGEEGSIEALTCSACNCHRNFHRKEIEGEPYDWLHHPRLGRKLLVGGKNMIAPPEAAAFAYPSAAGPAFISSRAQPHHMIMSYNMLGGGGGQSESEEHEEARAYSGPMMNKKRFRTKFTAEQKEKMLRFAEKVGWKLQKQEESVVQQFCEEIGVKRRVLKVWMHNNKHNLGKKDTISPPHSPTPLT 293
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 10543915 10544796 + CmoCh04G019970.1 Cmo04g01997 380972

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g01997 293 Pfam ZF-HD protein dimerisation region 80 133 IPR006456 -
Cmo04g01997 293 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 29 280 - -
Cmo04g01997 293 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 4 29 280 - -
Cmo04g01997 293 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 82 133 IPR006456 -
Cmo04g01997 293 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 83 132 IPR006456 -
Cmo04g01997 293 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 218 274 IPR006455 -
Cmo04g01997 293 Gene3D - 201 279 - -
Cmo04g01997 293 SUPERFAMILY Homeodomain-like 210 279 IPR009057 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g01997 - - - bhj:120068944 468.003
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00824 Cmo-Chr1:4412734 Cmo04g01997 Cmo-Chr4:10543915 1.32E-22 dispersed
Cmo04g01997 Cmo-Chr4:10543915 Cmo06g00007 Cmo-Chr6:34618 1.67E-135 dispersed
Cmo04g01997 Cmo-Chr4:10543915 Cmo12g00418 Cmo-Chr12:2570610 1.02E-62 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo05g00555 . 51 231 ZF-HD Transcription Factor Family AT4G24660 57.6 3.5e-51 199.1
Cmo07g00569 . 48 243 ZF-HD Transcription Factor Family AT4G24660 52.0 2.7e-48 189.5
Cmo12g00418 CST 85 295 ZF-HD Transcription Factor Family AT4G24660 50.7 3.6e-48 189.1
Cmo04g00894 CCT,ECH 54 219 ZF-HD Transcription Factor Family AT4G24660 55.0 4.0e-47 185.7
Cmo04g01997 . 81 280 ZF-HD Transcription Factor Family AT2G02540 54.9 4.6e-51 199.1
Cmo06g00007 . 70 262 ZF-HD Transcription Factor Family AT2G02540 50.5 1.9e-49 193.7
Cmo04g01997 . 78 283 ZF-HD Transcription Factor Family AT1G14440 54.7 8.2e-56 214.9
Cmo06g00007 . 67 262 ZF-HD Transcription Factor Family AT1G14440 54.3 2.2e-53 206.8
Cmo07g00483 CCT,CST,ECH 120 322 ZF-HD Transcription Factor Family AT2G18350 55.9 1.0e-51 201.1
Cmo14g00601 . 11 261 ZF-HD Transcription Factor Family AT5G15210 52.9 2.9e-49 193.0
Cmo04g02895 . 25 246 ZF-HD Transcription Factor Family AT5G15210 53.6 8.5e-49 191.4
Cmo11g01047 . 13 287 ZF-HD Transcription Factor Family AT5G15210 50.4 1.8e-46 183.7
Cmo15g00285 . 690 912 ZF-HD Transcription Factor Family AT5G15210 54.6 6.7e-46 181.8
Cmo11g01047 . 23 253 ZF-HD Transcription Factor Family AT3G28920 63.6 2.0e-57 220.3
Cmo14g00601 . 22 249 ZF-HD Transcription Factor Family AT3G28920 59.9 2.8e-56 216.5
Cmo04g02895 . 16 260 ZF-HD Transcription Factor Family AT3G28920 54.1 2.4e-55 213.4
Cmo15g00285 . 689 914 ZF-HD Transcription Factor Family AT3G28920 57.6 7.2e-52 201.8
Cmo04g02895 . 26 252 ZF-HD Transcription Factor Family AT5G39760 53.6 1.9e-50 197.2
Cmo15g00285 . 691 918 ZF-HD Transcription Factor Family AT5G39760 56.2 5.5e-50 195.7
Cmo14g00601 . 30 254 ZF-HD Transcription Factor Family AT5G39760 56.3 9.4e-50 194.9
Cmo11g01047 . 31 281 ZF-HD Transcription Factor Family AT5G39760 54.9 1.6e-49 194.1
Cmo04g02895 . 56 249 ZF-HD Transcription Factor Family AT1G69600 53.4 3.4e-49 192.6
Cmo15g00285 . 724 915 ZF-HD Transcription Factor Family AT1G69600 51.0 1.1e-47 187.6
Cmo18g01173 . 142 321 ZF-HD Transcription Factor Family AT1G69600 52.1 1.1e-47 187.6
Cmo04g01997 . 81 280 ZF-HD Transcription Factor Family AT2G02540 54.9 4.6e-51 199.1
Cmo06g00007 . 70 262 ZF-HD Transcription Factor Family AT2G02540 50.5 1.9e-49 193.7
Cmo05g00555 . 51 231 ZF-HD Transcription Factor Family AT4G24660 57.6 3.5e-51 199.1
Cmo07g00569 . 48 243 ZF-HD Transcription Factor Family AT4G24660 52.0 2.7e-48 189.5
Cmo12g00418 CST 85 295 ZF-HD Transcription Factor Family AT4G24660 50.7 3.6e-48 189.1
Cmo04g00894 CCT,ECH 54 219 ZF-HD Transcription Factor Family AT4G24660 55.0 4.0e-47 185.7
Cmo04g02895 . 26 252 ZF-HD Transcription Factor Family AT5G39760 53.6 1.9e-50 197.2
Cmo15g00285 . 691 918 ZF-HD Transcription Factor Family AT5G39760 56.2 5.5e-50 195.7
Cmo14g00601 . 30 254 ZF-HD Transcription Factor Family AT5G39760 56.3 9.4e-50 194.9
Cmo11g01047 . 31 281 ZF-HD Transcription Factor Family AT5G39760 54.9 1.6e-49 194.1
Cmo07g00483 CCT,CST,ECH 120 322 ZF-HD Transcription Factor Family AT2G18350 55.9 1.0e-51 201.1
Cmo04g02895 . 56 249 ZF-HD Transcription Factor Family AT1G69600 53.4 3.4e-49 192.6
Cmo15g00285 . 724 915 ZF-HD Transcription Factor Family AT1G69600 51.0 1.1e-47 187.6
Cmo18g01173 . 142 321 ZF-HD Transcription Factor Family AT1G69600 52.1 1.1e-47 187.6
Cmo14g00601 . 11 261 ZF-HD Transcription Factor Family AT5G15210 52.9 2.9e-49 193.0
Cmo04g02895 . 25 246 ZF-HD Transcription Factor Family AT5G15210 53.6 8.5e-49 191.4
Cmo11g01047 . 13 287 ZF-HD Transcription Factor Family AT5G15210 50.4 1.8e-46 183.7
Cmo15g00285 . 690 912 ZF-HD Transcription Factor Family AT5G15210 54.6 6.7e-46 181.8
Cmo04g01997 . 78 283 ZF-HD Transcription Factor Family AT1G14440 54.7 8.2e-56 214.9
Cmo06g00007 . 67 262 ZF-HD Transcription Factor Family AT1G14440 54.3 2.2e-53 206.8
Cmo11g01047 . 23 253 ZF-HD Transcription Factor Family AT3G28920 63.6 2.0e-57 220.3
Cmo14g00601 . 22 249 ZF-HD Transcription Factor Family AT3G28920 59.9 2.8e-56 216.5
Cmo04g02895 . 16 260 ZF-HD Transcription Factor Family AT3G28920 54.1 2.4e-55 213.4
Cmo15g00285 . 689 914 ZF-HD Transcription Factor Family AT3G28920 57.6 7.2e-52 201.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010486 1 0 1 1 1 1 2 1 1 0 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 0 1 1 1 32
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9667 PF04770 ZF-HD_dimer 1.20E-29 No_clan Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo04g01997 Cmo_Chr04 FPKM 0.666667 0.595522 3.71818 3.397507 0.0 0.0 0.0 0.0 0.0 0.0