Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g01997 ATGGAGCTCACTACTCAAGATCATCCCATTCCCATCCCCATCCCTTTAAATAGTCGCTACGGTGGCCACGACCACGACCACGACCATGTCATCCATCACCATGACCCGTCCGCCGCTTGCAACCATATCATCGCGGCGGCAGTCAATGGCGGTAGCCCACTTCCATCTTCTCAGATGGAAGTCGAGCTTCACCATAATCATAACAACAGCAACAACAATAACAATAACACGAAGAAGCAGGTAAAATATAAGGAGTGTCTCAAAAACCATGCGGCCTCCATGGGAGGTAATGCCACAGATGGGTGTGGTGAGTTCATGCCGAGTGGAGAAGAAGGATCCATTGAAGCACTCACGTGTTCGGCTTGCAATTGTCATAGAAACTTCCATCGAAAAGAGATCGAGGGAGAACCCTACGATTGGCTCCACCACCCTCGACTCGGGAGGAAGCTCCTCGTCGGAGGGAAGAACATGATCGCCCCACCAGAGGCAGCTGCATTTGCGTATCCATCCGCGGCAGGGCCGGCGTTCATATCGTCTAGAGCACAACCCCACCACATGATAATGTCGTACAACATGCTCGGCGGGGGAGGTGGGCAGTCAGAGTCGGAGGAGCACGAGGAGGCGAGGGCGTACTCGGGGCCAATGATGAACAAGAAGCGATTCCGAACGAAGTTCACGGCGGAGCAAAAGGAGAAGATGCTGAGGTTTGCAGAGAAAGTTGGATGGAAGCTTCAGAAACAAGAGGAGAGTGTGGTGCAGCAATTCTGTGAAGAGATTGGAGTGAAGAGGAGAGTTCTTAAGGTTTGGATGCATAACAATAAGCACAATCTTGGGAAGAAGGATACCATTTCCCCTCCACATTCTCCTACTCCCTTAACTTAA 882 51.36 MELTTQDHPIPIPIPLNSRYGGHDHDHDHVIHHHDPSAACNHIIAAAVNGGSPLPSSQMEVELHHNHNNSNNNNNNTKKQVKYKECLKNHAASMGGNATDGCGEFMPSGEEGSIEALTCSACNCHRNFHRKEIEGEPYDWLHHPRLGRKLLVGGKNMIAPPEAAAFAYPSAAGPAFISSRAQPHHMIMSYNMLGGGGGQSESEEHEEARAYSGPMMNKKRFRTKFTAEQKEKMLRFAEKVGWKLQKQEESVVQQFCEEIGVKRRVLKVWMHNNKHNLGKKDTISPPHSPTPLT 293
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 10543915 10544796 + CmoCh04G019970.1 Cmo04g01997 380972
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g01997 293 Pfam ZF-HD protein dimerisation region 80 133 IPR006456 -
Cmo04g01997 293 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 29 280 - -
Cmo04g01997 293 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 4 29 280 - -
Cmo04g01997 293 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 82 133 IPR006456 -
Cmo04g01997 293 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 83 132 IPR006456 -
Cmo04g01997 293 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 218 274 IPR006455 -
Cmo04g01997 293 Gene3D - 201 279 - -
Cmo04g01997 293 SUPERFAMILY Homeodomain-like 210 279 IPR009057 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00824 Cmo-Chr1:4412734 Cmo04g01997 Cmo-Chr4:10543915 1.32E-22 dispersed
Cmo04g01997 Cmo-Chr4:10543915 Cmo06g00007 Cmo-Chr6:34618 1.67E-135 dispersed
Cmo04g01997 Cmo-Chr4:10543915 Cmo12g00418 Cmo-Chr12:2570610 1.02E-62 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9667 PF04770 ZF-HD_dimer 1.20E-29 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g01997 - - bhj:120068944 468.003