Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g02004 ATGTCGTTTATTCAGCCTTCTGTTGCCTTATTGAACATGTACCTTGTTTTTCTATTTTCAGGGTCCTCTTCTGATGCATTGTATAGGGAATTATGGCATGCCTGTGCAGGACCTCTTGTCACCCTTCCTCGCCAAGACGAACGACTGGAAGCCTCGATGAATCAAGGATTGGAGCAACAAATGCCTTCATTCAACCTAGCATCAAAAATACTTTGTAAAGTTGTCAATGTTGTTCTTCGGGCGGAACCTGACACAGATGAAGTTTATGCTCAGATAACTCTGTTACCAGAAAGCAATCAAAGTGAAGTAACGACCCCAGATCCTGCACTTCCTGAGCCGACAAGATGTAACGTCCACTCATTTTGCAAGACGCTCACTGCTTCTGACACTAGCACTCATGGTGGCTTCTCTGTTCTTAGGAGGCATGCCGATGACTGTCTGCCACCTCTGGATATGTCTCAGCAGCCACCATGGCAAGAATTGGTAGCAACTGATTTACATGGGAATCAGTGGCATTTTAGGCACATTTTCCGAGGTCAGCCAAGGCGTCATTTACTAACAACTGGGTGGAGCGTCTTCGTTAGTTCCAAAAAGCTAGTAGCTGGAGATGCTTTTATCTTTTTAAGAGGTGAAAACGGGGAGCTTCGTGTTGGGGTGAGAAGACTCATGAGACAGCTAAACAACATGCCATCTTCTGTTATATCAAGTCACAGTATGCATCTTGGAGTTTTAGCCACTGCTTCTCATGCTGTTGCAACTGGAACGCTCTTTTCTGTCTTTTACAAGCCAAGAACAAGCAGGTCTACATTTCTTGTAAGTCTAAACAAGTACCTTGAAGCTCAAAACCATAAACTCTCTGTCGGGATGAGGTTCAAGATGAGGTTTGAGGGCGAGGAAGTACCTGAAAGAAGTTTTAGCGGAACAATTGTTGGTCTTGGAGATAATGCATCACCTGGGTGGGCTAATTCTGATTGGCGATCTTTAAAGGTGCAATGGGATGAACCTTCATCTATCTTGCGTCCAGATAGGGTGTCTGCTTGGGAATTGGAACCACTTGTTGCTTCGAACCCTCTAAGCTCTCAGCCTACGCAGAGGAACAAGCGTCCACGGCCAACTGTTTTGCCTTCACCTACGGCCGACGCAGCTGTACTCGGCGGGTGGAAACCTACGGTTGAATCTTCTGCCTTTTCGTTTACTGAGCCACCACAGCGTGGAAGGGACGTGTATTCATCACCGAAGTTCAGTACTGCTGCTTCGAATTCTCTTGGTTTTAATGGGAATAGTTCTCTTGGCGCTGTGTCGAGCAACAACTACTGGTCTAATACCAATAGGGTGGAAAATATTATTGACACTTCATCTCATGGAGCTAACAGGGAACCCATTGAAAAGAAACAAAACACTAGAAATGGGTGCAGGCTTTTCGGGATCCAGCTTCTTGGAAATTCCGATGTCGGTGAAGCTTCTCCAGATACAACTCCTAAAATGGTCAGTGAGGATAGGTCGGTTCCACCAGTAGACACGGAATTCGACCAGAATTCTGAGCGATCAAACGTTCACCGATTAAATATTCCTTCAGTAAGCTGTGATGCTGATAAATCATGTTTGATTTCCCCACTAGAGTCTCAAAGCAGACAAATCCGCAGCTGCACGAAGGTTCATATGCAAGGAATTGCCGTTGGGAGGGCCGTTGATTTAACACGGTTCAATCAATATGATGATCTACTTGGGAAACTGGAGGAGATGTTTGACATAGAGGGTGAGCTTTGTGGCTCTGTAAAGAAATGGCAGGTTGTTTACACCGACGACGAAGATGATATGATGATGGTTGGAGACGATCCATGGAAATATCTTAATCATGTGTGGATTCGAAACTTGGGGTTTATGTATGGCTTTCTAAATGATTGCAGCGAGTTCGTCAGCATGGTAAGGAAGATATTCATCTACACGACCGAAGAAGTGAAGAGACTGTCGCCGAAGATAAAACTCCCCCTTGGTGGAGAGACAAAGCTTAGTAAGCCAGATTCCGATACGACTGCCAACCACACAGAGGATCAGTCGTCCATCGTCGGGGGTCGATCGAATGGAATCTGTAACAAGGCGTTCGTATATTTTCACTTGGAAACTCTGAAGATTCCAACGACGACAAAGCTAGCTGCAGGAGCTGCTACATATATGAAGGGGGTTGGGGAGTCTGTTTTTGTATGGGTTGTGGATGATAATGGAGGGAGGAAGAAGCTCAAAACATCTTCCATGCTTCCAATGTAA 2265 45.39 MSFIQPSVALLNMYLVFLFSGSSSDALYRELWHACAGPLVTLPRQDERLEASMNQGLEQQMPSFNLASKILCKVVNVVLRAEPDTDEVYAQITLLPESNQSEVTTPDPALPEPTRCNVHSFCKTLTASDTSTHGGFSVLRRHADDCLPPLDMSQQPPWQELVATDLHGNQWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIFLRGENGELRVGVRRLMRQLNNMPSSVISSHSMHLGVLATASHAVATGTLFSVFYKPRTSRSTFLVSLNKYLEAQNHKLSVGMRFKMRFEGEEVPERSFSGTIVGLGDNASPGWANSDWRSLKVQWDEPSSILRPDRVSAWELEPLVASNPLSSQPTQRNKRPRPTVLPSPTADAAVLGGWKPTVESSAFSFTEPPQRGRDVYSSPKFSTAASNSLGFNGNSSLGAVSSNNYWSNTNRVENIIDTSSHGANREPIEKKQNTRNGCRLFGIQLLGNSDVGEASPDTTPKMVSEDRSVPPVDTEFDQNSERSNVHRLNIPSVSCDADKSCLISPLESQSRQIRSCTKVHMQGIAVGRAVDLTRFNQYDDLLGKLEEMFDIEGELCGSVKKWQVVYTDDEDDMMMVGDDPWKYLNHVWIRNLGFMYGFLNDCSEFVSMVRKIFIYTTEEVKRLSPKIKLPLGGETKLSKPDSDTTANHTEDQSSIVGGRSNGICNKAFVYFHLETLKIPTTTKLAAGAATYMKGVGESVFVWVVDDNGGRKKLKTSSMLPM 754
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 10648106 10655084 + CmoCh04G020040.1 Cmo04g02004 380979
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g02004 754 Pfam Auxin response factor 247 329 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Cmo04g02004 754 CDD B3_DNA 119 221 IPR003340 GO:0003677
Cmo04g02004 754 SUPERFAMILY DNA-binding pseudobarrel domain 110 250 IPR015300 -
Cmo04g02004 754 SUPERFAMILY CAD & PB1 domains 549 618 - -
Cmo04g02004 754 MobiDBLite consensus disorder prediction 667 687 - -
Cmo04g02004 754 ProSiteProfiles B3 DNA-binding domain profile. 121 223 IPR003340 GO:0003677
Cmo04g02004 754 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 15 671 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cmo04g02004 754 Gene3D - 542 657 - -
Cmo04g02004 754 ProSiteProfiles PB1 domain profile. 547 661 IPR000270 GO:0005515
Cmo04g02004 754 Pfam AUX/IAA family 546 583 IPR033389 -
Cmo04g02004 754 Gene3D - 118 223 IPR015300 -
Cmo04g02004 754 Pfam B3 DNA binding domain 121 221 IPR003340 GO:0003677
Cmo04g02004 754 PANTHER AUXIN RESPONSE FACTOR 9 15 671 - -
Cmo04g02004 754 MobiDBLite consensus disorder prediction 355 371 - -
Cmo04g02004 754 MobiDBLite consensus disorder prediction 355 381 - -
Cmo04g02004 754 MobiDBLite consensus disorder prediction 482 512 - -
Cmo04g02004 754 Gene3D - 284 357 - -
Cmo04g02004 754 SMART B3_2 121 223 IPR003340 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02004 Cmo-Chr4:10648106 Cmo06g00003 Cmo-Chr6:8714 0 dispersed
Cmo04g02004 Cmo-Chr4:10648106 Cmo04g00721 Cmo-Chr4:3582996 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9668 PF02309 AUX_IAA 2.30E-06 CL0072 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g02004 K14486 - csv:101204612 1188.71