Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g02051 ATGTTCACGCCTCAGAGGAAGGATGTGGCTTTTACAGACGGCCCACCGCCGCCGTTGGGGTCTCTGAACGACCGATTCCATAAAATTGCGGCAGCTGCGGATACTGGGAACATGGACGATTGGAGGAAGTTTAAGAAGGCGGGGTTGTTGGACGCGGCTGCAATGGAGCGCAAGGATCGGGAGGCGCTTCTTGAGAAGGCTTCAAGGCTTCAGAGCGAGCTTTTTGATTACCAGCACAATTTAGGACTTATTTTGCTAGAGAAGAAAATGTGGGCTTCAAAGTATGACCAACTAGGGCAAGATTTAGCAGAAACTGAGGAGATCTTCAAACGTGAACAATCAGCACACTTAATTGCATTATCTGAAGTTGAAACGAGGAGGGATAATTTGAAGAAAGCTCTTGCTGCCGAGAAGCAACATGTGTCTAGTCTTAAAAAGGCTTTATGTGAAGTAAAGGAGGAGCGTGCAGAAATCAAGCTTACTTCTCAGAAAAAGTTGGCTGATGCAAATGCTTTGATGCATGGAATTGAGGAGAAATCTTTGAAGTTGCAGAAAAAGTTGAATGCTGCTGAAGCCAAGCTTGCTGAGGTAAATAGGAAGAGTTCAGAGTTGGAGATGAGGATGCATGAAGTTGAAGCTCGTGAAAGTGTGCTTCAGACGGAGCAAATATCCTTGGCCACAAGGAAAGAAGCACATCAGGTGACTTCCCATAAAGAAGAAGACGGCTTACGTAAGTGGCAACAAAAGTTGCAGGAACGGGAAGAAAGCTTGAGCAGGAGTCGTGAATTGCTAAATGATAAAGAGCAGAAGGTAAATGAAAATGGCACAATTATGAAACAAAAAGAGAAGGATCTCGAAGAGATAAAGAAGAAGATTGATCAATCAAGTTCAATTCTGAAAGAGAAGGAAGATGATGTAAATAGACAATTGGCAGATGTAGAAGCAAAAGAGAAGTATATGACTTTTTTTTTTTTCATTTCCCACCCCCAACAAAAATGGTTGCAGGAAGCTGATTTATCAAGAAGTCTCTTAGAGAAAAAACAAGAAGAATTAGATCATATGGAAGAAAACCTTCGTGGGAGAGAAAGGATGGAAACCCAGCAGCTGCTTCATGAACAAAGTGCTCTTCTACAGAAGAAGAGAGAAGAGTTTGAGTTGCAATTGGAAGAAAAAAGGCATTCTGTGGAAAATGAAGGTAGTATCACGTTAGGAGCAATCAAAAGGAAAGATATTGAAATTAATCATAAGAAAGAAAAGTTAGTGAAGCAAGAACAAGCTTTGGATAAAAAATTGCATAGAACAAAGGAGAAAGAGGGTGATCTTGAACGAAAGTTAAAGGCTTTGAAGGCAAAAGATAAGATTTTGAAAGCTGATGAGAGAAAGCACGAGGTGGAAAGGTTGCAAATGCTAGCTGATAGAGATAGCTTACAGTCTCTCATTGATGAGATTGAGAAAATCAGGACTGCAAGTACGCAGAAGGAGTGGCAATTTCACGAGGAGAGGGAGAAATTGCAGGTGATAAAAGAAGAGAGATCAGAGCATGTTCGTTTACAATGTCAATTGATGCAGGAAATTGAGAGTTACAGACTTCAGAACAAAATAGTTACGAAAGAACATGATGATCTGAAGCAGGAAAGGGTCAAGTTTGAAAGAGATTGGGAAGCCTTAGATGAGAAAAGGACTGAAATACATAATGGACTTGGAGATCTTGAGGAGTTGAGGAAGAAATTAGAGATCTTAAGGACAGAGGAGGAAAGGTTGAGAAATGAGAAAACTGAGATGCTAATTTATATGCAGAGAGAGTTGGATAATGTCAAGCAAGAAAAAGAATTATTTGCCTCAACTACAAGGCATGAGCAGCAAGCCTTGTCTCAGCAGGCCCAAAATAAGCATAACCAATTACTTCAAGATATAGAGTTGCAGAGAAAAGATCTTGAGAGTCACTTGCAGAAGAGCCAGGAGGAACTAGAGAAAAGACGGCAGGAAAGGGAGCTAGCATTTGAAGAGGAGAGAAAGAGAGAACGAAATGAAATTTTGTACTTGAAAGACATTGCTCTGAAGGAAAAGGAAGAGTTATCATCTGAGAGGCATCAATTGGAAAAGGAAAAGGAGGTTGTTACCATGAATAGGAAGGAATTGATAGCAGACCATCTTGAAATTCATCAAGATATAGACAAACTCAACGTATTAAGTAAGGAGCTGAAATGTCAGAGAGAACAGCTTATTCAAGATAGGATTTGCTTTTTGGCTTTTGTTGATAAGCTTAAGAGTTGTGAGAATTGTGGCGTCTCCATTAAGGAATTTATGGTTCCTGACCTCCAAATGCCTGCAGACATCAGAGAACCGGACCTTCTAGCAAATCTAGATGTAGAATCTTTAAAACTTTTCCAGAAAGAATTAGCTGCTTCCGAGTTCGATTCAGACTCTGGAGGCCGCATGTCTTGGCTCAGAAGATGCAGCAGAAAGATTTTAAATCTGTCTCCTATCAAGAGAATTGGACAAGTAGTTCCTCCCGTTTCCATGAAGTTGGCTGCAGATTGTACTGATTTAGAAGCTAAGGAGCCTAGCGTTAGTGCTGGCGATGTGAAAAGATTTTCATTTAGTGATAACATCAGAGTGGCTGAAGATAGACATGCGCACACATTTGATGATTTTGGCAACGTAGACAGCAAGTTTGAAGAAGCTTCAGAAGGTTCCAAACAACCTGACCTAAAGAGAGAGAAGCAGAAACGTGAGAAAGGACTCAATTCCAGGCATAGAACACACTCGATGAAAGCAACTGTTCAAGATGCAAAATTGTTTCTTGGAGAAACTGTGGGACAATCGGATCTTAATGTACTTGTACAGAAAAGTGATTCCAAATTTTCAAATAAAGAAACTACCAATGTTAGGAAACGGCCACGGGCAGAATCCTCCACAATTTCTGTTAGTGAGCAGGATGGAGATGATAGTGAACGATGTTCTGATAGCATCACAACAGGTAGGCAACGTAAAAGGCAGCAAAAGATTGCTTCGGTGCAGGCACAAGGAGAAAGCCGATATAATCTGAGGCGACCCAAAATTGGTGGCACAGCTAGTGCAACTGAGGTTTCAGGAAACCTGACAACAGGTATGGAGAAAGAAAAGGATGCAACCATGACAGCGAAAGTGGAACCAAGTGGGGAAGCTTTTGTTACCTCTTCGTTGAGAAGTGTCGATGGTGAGAACATAAAAAAAGCAGACTATGTGCAGCTTACAACAGTCAGAACCATCTATCGATCGGAGGATAGAGTAGTTCAGTTTGAATCGCTGAGAAATCCTGAAGATAATGCTTCTATGGAGAAGTTGGTTGGTATGGATGATTTGTGCGATGAAGTGAATGATACGTCGGAATATGAAGATGAAGATGGAAACATGATCGATGACGCAGAAGACGAGTACGATGAAGAGCAGCCTGATGCAAAATCGATTGGAAAGAAGATCTGGACCTTCTTCACAACTTGA 3483 41.14 MFTPQRKDVAFTDGPPPPLGSLNDRFHKIAAAADTGNMDDWRKFKKAGLLDAAAMERKDREALLEKASRLQSELFDYQHNLGLILLEKKMWASKYDQLGQDLAETEEIFKREQSAHLIALSEVETRRDNLKKALAAEKQHVSSLKKALCEVKEERAEIKLTSQKKLADANALMHGIEEKSLKLQKKLNAAEAKLAEVNRKSSELEMRMHEVEARESVLQTEQISLATRKEAHQVTSHKEEDGLRKWQQKLQEREESLSRSRELLNDKEQKVNENGTIMKQKEKDLEEIKKKIDQSSSILKEKEDDVNRQLADVEAKEKYMTFFFFISHPQQKWLQEADLSRSLLEKKQEELDHMEENLRGRERMETQQLLHEQSALLQKKREEFELQLEEKRHSVENEGSITLGAIKRKDIEINHKKEKLVKQEQALDKKLHRTKEKEGDLERKLKALKAKDKILKADERKHEVERLQMLADRDSLQSLIDEIEKIRTASTQKEWQFHEEREKLQVIKEERSEHVRLQCQLMQEIESYRLQNKIVTKEHDDLKQERVKFERDWEALDEKRTEIHNGLGDLEELRKKLEILRTEEERLRNEKTEMLIYMQRELDNVKQEKELFASTTRHEQQALSQQAQNKHNQLLQDIELQRKDLESHLQKSQEELEKRRQERELAFEEERKRERNEILYLKDIALKEKEELSSERHQLEKEKEVVTMNRKELIADHLEIHQDIDKLNVLSKELKCQREQLIQDRICFLAFVDKLKSCENCGVSIKEFMVPDLQMPADIREPDLLANLDVESLKLFQKELAASEFDSDSGGRMSWLRRCSRKILNLSPIKRIGQVVPPVSMKLAADCTDLEAKEPSVSAGDVKRFSFSDNIRVAEDRHAHTFDDFGNVDSKFEEASEGSKQPDLKREKQKREKGLNSRHRTHSMKATVQDAKLFLGETVGQSDLNVLVQKSDSKFSNKETTNVRKRPRAESSTISVSEQDGDDSERCSDSITTGRQRKRQQKIASVQAQGESRYNLRRPKIGGTASATEVSGNLTTGMEKEKDATMTAKVEPSGEAFVTSSLRSVDGENIKKADYVQLTTVRTIYRSEDRVVQFESLRNPEDNASMEKLVGMDDLCDEVNDTSEYEDEDGNMIDDAEDEYDEEQPDAKSIGKKIWTFFTT 1160
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 11445779 11454151 + CmoCh04G020510.1 Cmo04g02051 381026

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g02051 1160 MobiDBLite consensus disorder prediction 956 1028 - -
Cmo04g02051 1160 MobiDBLite consensus disorder prediction 228 251 - -
Cmo04g02051 1160 MobiDBLite consensus disorder prediction 979 996 - -
Cmo04g02051 1160 Coils Coil 417 451 - -
Cmo04g02051 1160 Coils Coil 337 364 - -
Cmo04g02051 1160 Coils Coil 682 716 - -
Cmo04g02051 1160 Coils Coil 624 673 - -
Cmo04g02051 1160 MobiDBLite consensus disorder prediction 892 911 - -
Cmo04g02051 1160 Coils Coil 278 305 - -
Cmo04g02051 1160 Coils Coil 724 744 - -
Cmo04g02051 1160 MobiDBLite consensus disorder prediction 1 23 - -
Cmo04g02051 1160 Coils Coil 173 214 - -
Cmo04g02051 1160 MobiDBLite consensus disorder prediction 997 1012 - -
Cmo04g02051 1160 MobiDBLite consensus disorder prediction 892 924 - -
Cmo04g02051 1160 PANTHER PROTEIN CROWDED NUCLEI 4 1 1160 IPR040418 GO:0005634|GO:0006997
Cmo04g02051 1160 Coils Coil 243 270 - -
Cmo04g02051 1160 Coils Coil 525 593 - -
Cmo04g02051 1160 Coils Coil 53 80 - -
Cmo04g02051 1160 MobiDBLite consensus disorder prediction 231 251 - -
Cmo04g02051 1160 PANTHER PROTEIN CROWDED NUCLEI 3 1 1160 - -
Cmo04g02051 1160 Coils Coil 120 164 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g02051 - - - csv:101222820 1593.56
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00921 Cmo-Chr3:7025646 Cmo04g02051 Cmo-Chr4:11445779 7.10E-65 dispersed
Cmo04g02051 Cmo-Chr4:11445779 Cmo15g00207 Cmo-Chr15:990907 1.54E-174 dispersed
Cmo04g02051 Cmo-Chr4:11445779 Cmo04g02052 Cmo-Chr4:11454411 9.23E-97 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g246 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0864 Cone19ag0864 . . . Csa05g02073 . . . Blo11g00826 Bda07g01523 . Bpe11g01685 . . . . Cmo04g02051 . . . Car04g01940 . . . Bhi12g00824 . . . . . Lcy10g0868 Cla01g00563 Cam01g0586 Cec01g0578 Cco01g0602 Clacu01g0581 Cmu01g0552 Cre09g1955 Lsi09g00612 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004989 1 2 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 3 4 1 1 1 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo04g02051 Cmo_Chr04 FPKM 31.722519 36.703087 1.641013 1.562368 88.586151 88.444443 89.003761 1.766834 1.62611 1.700628